miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12444 3' -53 NC_003324.1 + 21963 0.66 0.856489
Target:  5'- ----cGGCGGCGcGAUGcacCUUggaGCCGGCa -3'
miRNA:   3'- cguuaCCGCCGU-UUGCa--GAA---CGGCCG- -5'
12444 3' -53 NC_003324.1 + 55581 0.66 0.856489
Target:  5'- ----aGGcCGGCAGGC-UCcUGCCcGGCg -3'
miRNA:   3'- cguuaCC-GCCGUUUGcAGaACGG-CCG- -5'
12444 3' -53 NC_003324.1 + 24040 0.66 0.854793
Target:  5'- -aGAUGGCGGCcuucucggcacuGGCGggcuuuaccuUCUcGCCGGUg -3'
miRNA:   3'- cgUUACCGCCGu-----------UUGC----------AGAaCGGCCG- -5'
12444 3' -53 NC_003324.1 + 28551 0.66 0.853942
Target:  5'- cGCGcucaacAUGGCGGCGuuagcaucgacauaGAcCGUUUUGgCGGUu -3'
miRNA:   3'- -CGU------UACCGCCGU--------------UU-GCAGAACgGCCG- -5'
12444 3' -53 NC_003324.1 + 36653 0.66 0.847917
Target:  5'- gGCGAaGGUGccgccggagauGCgAGAUGUCUUGuCCGGUa -3'
miRNA:   3'- -CGUUaCCGC-----------CG-UUUGCAGAAC-GGCCG- -5'
12444 3' -53 NC_003324.1 + 14464 0.66 0.847917
Target:  5'- aGCAu---CGGCGGAC--CUUGCUGGCa -3'
miRNA:   3'- -CGUuaccGCCGUUUGcaGAACGGCCG- -5'
12444 3' -53 NC_003324.1 + 53064 0.66 0.847917
Target:  5'- cGCuucauUGGCGGCAGgucGCGcUCgucUCGGCg -3'
miRNA:   3'- -CGuu---ACCGCCGUU---UGC-AGaacGGCCG- -5'
12444 3' -53 NC_003324.1 + 56188 0.66 0.830085
Target:  5'- ---uUGGCGGCGAgaacggaaACGaUCUgGCCaGCg -3'
miRNA:   3'- cguuACCGCCGUU--------UGC-AGAaCGGcCG- -5'
12444 3' -53 NC_003324.1 + 20512 0.66 0.830085
Target:  5'- aGCGAgGGCGugcccgccgaccGCAAGCGcccaUCagcGCCGGCa -3'
miRNA:   3'- -CGUUaCCGC------------CGUUUGC----AGaa-CGGCCG- -5'
12444 3' -53 NC_003324.1 + 23831 0.66 0.830085
Target:  5'- gGUAGUGGuCGGaCGuuuCGUaguuuccgGCCGGCg -3'
miRNA:   3'- -CGUUACC-GCC-GUuu-GCAgaa-----CGGCCG- -5'
12444 3' -53 NC_003324.1 + 43027 0.66 0.830085
Target:  5'- gGUAGUGG-GGCcuGCa--UUGCCGGUa -3'
miRNA:   3'- -CGUUACCgCCGuuUGcagAACGGCCG- -5'
12444 3' -53 NC_003324.1 + 41356 0.66 0.830085
Target:  5'- cGCugggGGCGGCuuAAUGaaguaGCCGGCa -3'
miRNA:   3'- -CGuua-CCGCCGu-UUGCagaa-CGGCCG- -5'
12444 3' -53 NC_003324.1 + 47962 0.66 0.830085
Target:  5'- aGCAcgGuuCGGCAAAgGUCcugacGCCGGUc -3'
miRNA:   3'- -CGUuaCc-GCCGUUUgCAGaa---CGGCCG- -5'
12444 3' -53 NC_003324.1 + 54551 0.66 0.830085
Target:  5'- aGCAAUGG-GGCGAGuggaagccCGUCUcugaaauggGCgCGGCc -3'
miRNA:   3'- -CGUUACCgCCGUUU--------GCAGAa--------CG-GCCG- -5'
12444 3' -53 NC_003324.1 + 29968 0.66 0.824565
Target:  5'- cGUAGcGGCGGCAGccGgGUCcgcaucgaucccgGCCGGUg -3'
miRNA:   3'- -CGUUaCCGCCGUU--UgCAGaa-----------CGGCCG- -5'
12444 3' -53 NC_003324.1 + 23783 0.66 0.820844
Target:  5'- ----cGGCGGC--GCGUUcgGCCucGGCg -3'
miRNA:   3'- cguuaCCGCCGuuUGCAGaaCGG--CCG- -5'
12444 3' -53 NC_003324.1 + 26798 0.66 0.820844
Target:  5'- gGCAGacGCGGCcguGCG-CUUGgCUGGCu -3'
miRNA:   3'- -CGUUacCGCCGuu-UGCaGAAC-GGCCG- -5'
12444 3' -53 NC_003324.1 + 53186 0.66 0.820844
Target:  5'- aGCAuGUGGUGGguGGuagCUggcgGCCGGCu -3'
miRNA:   3'- -CGU-UACCGCCguUUgcaGAa---CGGCCG- -5'
12444 3' -53 NC_003324.1 + 34598 0.66 0.820844
Target:  5'- gGCGAuuccgcUGGCGGCAagaaggacccGACGaacaagacGCCGGCc -3'
miRNA:   3'- -CGUU------ACCGCCGU----------UUGCagaa----CGGCCG- -5'
12444 3' -53 NC_003324.1 + 55116 0.66 0.820844
Target:  5'- uGCAcGUGaaCGGCAugggcuuCGUCgaagUUGCCGGCa -3'
miRNA:   3'- -CGU-UACc-GCCGUuu-----GCAG----AACGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.