miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12445 5' -53.7 NC_003324.1 + 43787 0.68 0.700056
Target:  5'- uCGAGCAggGUGCCGggaacGCCggcaagGCGCGUg- -3'
miRNA:   3'- -GCUUGUaaCGCGGC-----UGGa-----CGUGCAgg -5'
12445 5' -53.7 NC_003324.1 + 54058 0.68 0.700056
Target:  5'- uGAACAcgcgucgGCGCCGACCgUGaACGUgCu -3'
miRNA:   3'- gCUUGUaa-----CGCGGCUGG-ACgUGCAgG- -5'
12445 5' -53.7 NC_003324.1 + 23095 0.69 0.678322
Target:  5'- aCGAACAUcgGCuuGCgGGCCUGUccgauGCGUCg -3'
miRNA:   3'- -GCUUGUAa-CG--CGgCUGGACG-----UGCAGg -5'
12445 5' -53.7 NC_003324.1 + 11544 0.69 0.678322
Target:  5'- uGAccGCAaUGUGCC--CCUGCGCGuUCCa -3'
miRNA:   3'- gCU--UGUaACGCGGcuGGACGUGC-AGG- -5'
12445 5' -53.7 NC_003324.1 + 15115 0.69 0.667384
Target:  5'- -uGGCGUccUGCGCCaugaucGACCUGC-CGUCg -3'
miRNA:   3'- gcUUGUA--ACGCGG------CUGGACGuGCAGg -5'
12445 5' -53.7 NC_003324.1 + 12708 0.69 0.645418
Target:  5'- aGAGCAgauaUGCGCCguuGAUCUGCcCG-CCg -3'
miRNA:   3'- gCUUGUa---ACGCGG---CUGGACGuGCaGG- -5'
12445 5' -53.7 NC_003324.1 + 24404 0.69 0.645418
Target:  5'- gGAccGCGU--UGCCGGCauggUGCGCGUCCg -3'
miRNA:   3'- gCU--UGUAacGCGGCUGg---ACGUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 13708 0.69 0.634412
Target:  5'- uCGGAUcg-GaUGCCGaucGCCUGCGCGUCUu -3'
miRNA:   3'- -GCUUGuaaC-GCGGC---UGGACGUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 33043 0.69 0.634412
Target:  5'- gCGAGCAgaugcaGCGCgUGACCUucacgauCACGUCCg -3'
miRNA:   3'- -GCUUGUaa----CGCG-GCUGGAc------GUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 42298 0.7 0.612404
Target:  5'- uGAG---UGCGCCG-CCUGCcACGUgCCg -3'
miRNA:   3'- gCUUguaACGCGGCuGGACG-UGCA-GG- -5'
12445 5' -53.7 NC_003324.1 + 19490 0.7 0.583906
Target:  5'- gCGAuaGCGUcgGCGUCGGCgUGCuucuugccgcggaagGCGUCCa -3'
miRNA:   3'- -GCU--UGUAa-CGCGGCUGgACG---------------UGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 55504 0.7 0.579542
Target:  5'- cCGGGCAggaGCcuGCCGGCCUcGaCACGUUCa -3'
miRNA:   3'- -GCUUGUaa-CG--CGGCUGGA-C-GUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 19881 0.7 0.568664
Target:  5'- aGAGCug-GCGCCaacACCUGUcguuCGUCCa -3'
miRNA:   3'- gCUUGuaaCGCGGc--UGGACGu---GCAGG- -5'
12445 5' -53.7 NC_003324.1 + 23753 0.71 0.557837
Target:  5'- -cGACGUUGCGCCGGaaaucgggguCCgauucggcgGCGCGUUCg -3'
miRNA:   3'- gcUUGUAACGCGGCU----------GGa--------CGUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 1386 0.71 0.557837
Target:  5'- cCGuGACAUcgaUGCGCCGACggugCUGgGCGUUCu -3'
miRNA:   3'- -GC-UUGUA---ACGCGGCUG----GACgUGCAGG- -5'
12445 5' -53.7 NC_003324.1 + 16340 0.71 0.54707
Target:  5'- gCGAcgGCGUUGcCGUCGAUC-GCGuCGUCCa -3'
miRNA:   3'- -GCU--UGUAAC-GCGGCUGGaCGU-GCAGG- -5'
12445 5' -53.7 NC_003324.1 + 13094 0.72 0.484101
Target:  5'- gCGGGCGUUGaUGCCGcCCUGCAgauCG-CCa -3'
miRNA:   3'- -GCUUGUAAC-GCGGCuGGACGU---GCaGG- -5'
12445 5' -53.7 NC_003324.1 + 16320 0.73 0.444107
Target:  5'- aGGGCccUGCGCUGGCCgcgucgGCACGgCCu -3'
miRNA:   3'- gCUUGuaACGCGGCUGGa-----CGUGCaGG- -5'
12445 5' -53.7 NC_003324.1 + 24929 0.74 0.395932
Target:  5'- gCGAGCAgaUUGCcaagacgGCCGACCUugucgGCGCGaUCCg -3'
miRNA:   3'- -GCUUGU--AACG-------CGGCUGGA-----CGUGC-AGG- -5'
12445 5' -53.7 NC_003324.1 + 2630 0.75 0.352941
Target:  5'- gGAACGgcGUGCCG-UCUGC-CGUCCg -3'
miRNA:   3'- gCUUGUaaCGCGGCuGGACGuGCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.