miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12446 3' -53.6 NC_003324.1 + 15955 0.66 0.797159
Target:  5'- aAUCGACaaGGCGGgggcGUUGGCGACGa--- -3'
miRNA:   3'- -UAGCUG--CCGUUa---CAGCCGCUGUaguu -5'
12446 3' -53.6 NC_003324.1 + 2498 0.66 0.791172
Target:  5'- cGUCGGCGGCuucaucaucggcGUUGGCGGuguCAUCAu -3'
miRNA:   3'- -UAGCUGCCGuua---------CAGCCGCU---GUAGUu -5'
12446 3' -53.6 NC_003324.1 + 53059 0.66 0.776963
Target:  5'- cAUUGGCGGCAggucgcgcucGUcUCGGCG-CGUCAc -3'
miRNA:   3'- -UAGCUGCCGU----------UAcAGCCGCuGUAGUu -5'
12446 3' -53.6 NC_003324.1 + 36405 0.66 0.776963
Target:  5'- -aCGAUGGCGcgGUgGaaGACAUCAAc -3'
miRNA:   3'- uaGCUGCCGUuaCAgCcgCUGUAGUU- -5'
12446 3' -53.6 NC_003324.1 + 1528 0.66 0.766623
Target:  5'- -cCGGCGGCAGUGgugcgCGGCGcUAUg-- -3'
miRNA:   3'- uaGCUGCCGUUACa----GCCGCuGUAguu -5'
12446 3' -53.6 NC_003324.1 + 43147 0.66 0.766623
Target:  5'- cUCGACGGCGAgcuUGUUGaGCGAgCGcCAAu -3'
miRNA:   3'- uAGCUGCCGUU---ACAGC-CGCU-GUaGUU- -5'
12446 3' -53.6 NC_003324.1 + 20803 0.66 0.745519
Target:  5'- --aGGCGGCGgaccGUGUUGGUGACGcgCAu -3'
miRNA:   3'- uagCUGCCGU----UACAGCCGCUGUa-GUu -5'
12446 3' -53.6 NC_003324.1 + 47652 0.66 0.745519
Target:  5'- cUCGACGGCGAgggucgaUCGGCccuCGUCAu -3'
miRNA:   3'- uAGCUGCCGUUac-----AGCCGcu-GUAGUu -5'
12446 3' -53.6 NC_003324.1 + 7650 0.67 0.734779
Target:  5'- aGUCGcgcCGGCAGUGcCGGCuGGCGUUu- -3'
miRNA:   3'- -UAGCu--GCCGUUACaGCCG-CUGUAGuu -5'
12446 3' -53.6 NC_003324.1 + 33540 0.67 0.730452
Target:  5'- cGUCGACGGCuccauaaaauUCGGCGAgCGUUAc -3'
miRNA:   3'- -UAGCUGCCGuuac------AGCCGCU-GUAGUu -5'
12446 3' -53.6 NC_003324.1 + 31312 0.67 0.690861
Target:  5'- -cCGGCGGCGcUGgcgcuggCGGgGGCAUCGu -3'
miRNA:   3'- uaGCUGCCGUuACa------GCCgCUGUAGUu -5'
12446 3' -53.6 NC_003324.1 + 39745 0.68 0.679703
Target:  5'- -aUGGCGGCcuuGGUGUcCGGCGGCAcgugcUCGAu -3'
miRNA:   3'- uaGCUGCCG---UUACA-GCCGCUGU-----AGUU- -5'
12446 3' -53.6 NC_003324.1 + 34420 0.68 0.668498
Target:  5'- cUCGGCaucGGUGAUGUCGGcCGACggCAc -3'
miRNA:   3'- uAGCUG---CCGUUACAGCC-GCUGuaGUu -5'
12446 3' -53.6 NC_003324.1 + 31032 0.68 0.657256
Target:  5'- -gCGAcCGGCGcgGUCGGCGu--UCAAc -3'
miRNA:   3'- uaGCU-GCCGUuaCAGCCGCuguAGUU- -5'
12446 3' -53.6 NC_003324.1 + 34729 0.68 0.64599
Target:  5'- cUCGAUGGCGAUGUucuugacgaCGGUGGCGg--- -3'
miRNA:   3'- uAGCUGCCGUUACA---------GCCGCUGUaguu -5'
12446 3' -53.6 NC_003324.1 + 27077 0.68 0.63471
Target:  5'- aGUCGugGGCAGagacCGGCGGCAaCAc -3'
miRNA:   3'- -UAGCugCCGUUaca-GCCGCUGUaGUu -5'
12446 3' -53.6 NC_003324.1 + 20463 0.69 0.567338
Target:  5'- uGUCGAauaCGGCAcgGcCGGCGAUAgCAAg -3'
miRNA:   3'- -UAGCU---GCCGUuaCaGCCGCUGUaGUU- -5'
12446 3' -53.6 NC_003324.1 + 5124 0.7 0.523397
Target:  5'- cUUGGCGGCGGUGUCGauCGAgAUCAc -3'
miRNA:   3'- uAGCUGCCGUUACAGCc-GCUgUAGUu -5'
12446 3' -53.6 NC_003324.1 + 20422 0.71 0.470443
Target:  5'- uGUCGAacCGGCuucUGUCGGCGAUggCGAa -3'
miRNA:   3'- -UAGCU--GCCGuu-ACAGCCGCUGuaGUU- -5'
12446 3' -53.6 NC_003324.1 + 30128 0.71 0.460177
Target:  5'- -cCGGCGGCGugAUGggCGGCGGCAUgGGu -3'
miRNA:   3'- uaGCUGCCGU--UACa-GCCGCUGUAgUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.