miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12448 3' -54.3 NC_003324.1 + 42491 0.66 0.69816
Target:  5'- -----uGUCUGGcGCuGGCGCUGuuGCg -3'
miRNA:   3'- aauuucCAGACC-CGuCCGCGGCuuUG- -5'
12448 3' -54.3 NC_003324.1 + 16202 0.67 0.683671
Target:  5'- -gAAAGGUucuugucgauaccgCgacgGGGCAGGCcguGCCGAcGCg -3'
miRNA:   3'- aaUUUCCA--------------Ga---CCCGUCCG---CGGCUuUG- -5'
12448 3' -54.3 NC_003324.1 + 26053 0.67 0.675831
Target:  5'- ----uGGUCUGG---GGCGCCGAAGg -3'
miRNA:   3'- aauuuCCAGACCcguCCGCGGCUUUg -5'
12448 3' -54.3 NC_003324.1 + 44425 0.67 0.642039
Target:  5'- ---------cGGGCaccGGGCGCCGAGACu -3'
miRNA:   3'- aauuuccagaCCCG---UCCGCGGCUUUG- -5'
12448 3' -54.3 NC_003324.1 + 30561 0.68 0.596896
Target:  5'- -cGAGGGcCUGcucGGC-GGCGCCGAuuCg -3'
miRNA:   3'- aaUUUCCaGAC---CCGuCCGCGGCUuuG- -5'
12448 3' -54.3 NC_003324.1 + 9540 0.68 0.574473
Target:  5'- ---cGGGUCUGGGUGGucaGCCGGAg- -3'
miRNA:   3'- aauuUCCAGACCCGUCcg-CGGCUUug -5'
12448 3' -54.3 NC_003324.1 + 15453 0.69 0.563332
Target:  5'- -cGAAGGUUgccagGGGCgAGGCcaagGCCGAGGa -3'
miRNA:   3'- aaUUUCCAGa----CCCG-UCCG----CGGCUUUg -5'
12448 3' -54.3 NC_003324.1 + 9563 0.71 0.436251
Target:  5'- ---uGGGUCUGGGguGGCGaugccgcaaguaCCGgcACg -3'
miRNA:   3'- aauuUCCAGACCCguCCGC------------GGCuuUG- -5'
12448 3' -54.3 NC_003324.1 + 47511 0.72 0.397631
Target:  5'- -cAGAGcGUaguGGCAGGCGUCGAAGCu -3'
miRNA:   3'- aaUUUC-CAgacCCGUCCGCGGCUUUG- -5'
12448 3' -54.3 NC_003324.1 + 40070 0.72 0.387401
Target:  5'- ---cGGGUCUGGccggaacGC-GGCGCCGAAAUc -3'
miRNA:   3'- aauuUCCAGACC-------CGuCCGCGGCUUUG- -5'
12448 3' -54.3 NC_003324.1 + 28707 1.06 0.001526
Target:  5'- uUUAAAGGUCUGGGCAGGCGCCGAAACc -3'
miRNA:   3'- -AAUUUCCAGACCCGUCCGCGGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.