Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12448 | 5' | -60.4 | NC_003324.1 | + | 1617 | 0.66 | 0.471599 |
Target: 5'- uCGGggCCauaGCGCCGCGCaccacugCCGCcggAUCc -3' miRNA: 3'- -GUCaaGGg--CGCGGCGCGa------GGCG---UAGa -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 22037 | 0.66 | 0.471599 |
Target: 5'- aGGUgcaUCGCGCCGCcgacgagaugGC-CCGCAUCc -3' miRNA: 3'- gUCAag-GGCGCGGCG----------CGaGGCGUAGa -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 10616 | 0.66 | 0.461891 |
Target: 5'- cCAGUcgCCCaacGCugGCCGUgGCUCCGUGUCg -3' miRNA: 3'- -GUCAa-GGG---CG--CGGCG-CGAGGCGUAGa -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 23675 | 0.66 | 0.461891 |
Target: 5'- cCGGUaUCCacggCGCGCCGgGCUUCaCAUCg -3' miRNA: 3'- -GUCA-AGG----GCGCGGCgCGAGGcGUAGa -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 30837 | 0.66 | 0.45229 |
Target: 5'- gCAGga-CCGCGcCCGUGCUUC-CGUCa -3' miRNA: 3'- -GUCaagGGCGC-GGCGCGAGGcGUAGa -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 5545 | 0.66 | 0.433421 |
Target: 5'- aAGUUCCCGguugcCGCCGCaacCUUCGCcgCg -3' miRNA: 3'- gUCAAGGGC-----GCGGCGc--GAGGCGuaGa -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 37521 | 0.66 | 0.424159 |
Target: 5'- ---aUCCCGCGCUGUGCgCgGCAa-- -3' miRNA: 3'- gucaAGGGCGCGGCGCGaGgCGUaga -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 47682 | 0.67 | 0.405997 |
Target: 5'- aCAGUU-CCGuCGgCGCGCUUCGCGg-- -3' miRNA: 3'- -GUCAAgGGC-GCgGCGCGAGGCGUaga -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 17531 | 0.67 | 0.400645 |
Target: 5'- gCAGUUCCCGCGUCG-GCgaucggaaccaaaggUCCgGCAUg- -3' miRNA: 3'- -GUCAAGGGCGCGGCgCG---------------AGG-CGUAga -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 5415 | 0.67 | 0.37969 |
Target: 5'- uGGcgCCCGCaccuGCgGCGCcgaguucuucUCCGCAUCg -3' miRNA: 3'- gUCaaGGGCG----CGgCGCG----------AGGCGUAGa -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 40159 | 0.67 | 0.371179 |
Target: 5'- cCGGaUUUCgGCGCCGCGUUCCGg---- -3' miRNA: 3'- -GUC-AAGGgCGCGGCGCGAGGCguaga -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 12206 | 0.68 | 0.35455 |
Target: 5'- uCGGUgaaauUCCCG-GCCgaggccgcGCGCUCCGCgAUCa -3' miRNA: 3'- -GUCA-----AGGGCgCGG--------CGCGAGGCG-UAGa -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 41897 | 0.68 | 0.346435 |
Target: 5'- uGGUUCCCauaacgucgGCGUCGCaGUcgCCGCAUCc -3' miRNA: 3'- gUCAAGGG---------CGCGGCG-CGa-GGCGUAGa -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 12820 | 0.69 | 0.293397 |
Target: 5'- -cGUUUCgaCGCGCCGCaagggGCUCCGCAgacgCUg -3' miRNA: 3'- guCAAGG--GCGCGGCG-----CGAGGCGUa---GA- -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 36791 | 0.69 | 0.286359 |
Target: 5'- ----aCCaGCGCCaGCGCaUCCGCAUCa -3' miRNA: 3'- gucaaGGgCGCGG-CGCG-AGGCGUAGa -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 9920 | 0.71 | 0.206697 |
Target: 5'- aCGGUUCCUGCGCCGCucaUUCCGUuUUg -3' miRNA: 3'- -GUCAAGGGCGCGGCGc--GAGGCGuAGa -5' |
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12448 | 5' | -60.4 | NC_003324.1 | + | 28741 | 1.06 | 0.00053 |
Target: 5'- gCAGUUCCCGCGCCGCGCUCCGCAUCUc -3' miRNA: 3'- -GUCAAGGGCGCGGCGCGAGGCGUAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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