miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12448 5' -60.4 NC_003324.1 + 28741 1.06 0.00053
Target:  5'- gCAGUUCCCGCGCCGCGCUCCGCAUCUc -3'
miRNA:   3'- -GUCAAGGGCGCGGCGCGAGGCGUAGA- -5'
12448 5' -60.4 NC_003324.1 + 9920 0.71 0.206697
Target:  5'- aCGGUUCCUGCGCCGCucaUUCCGUuUUg -3'
miRNA:   3'- -GUCAAGGGCGCGGCGc--GAGGCGuAGa -5'
12448 5' -60.4 NC_003324.1 + 36791 0.69 0.286359
Target:  5'- ----aCCaGCGCCaGCGCaUCCGCAUCa -3'
miRNA:   3'- gucaaGGgCGCGG-CGCG-AGGCGUAGa -5'
12448 5' -60.4 NC_003324.1 + 12820 0.69 0.293397
Target:  5'- -cGUUUCgaCGCGCCGCaagggGCUCCGCAgacgCUg -3'
miRNA:   3'- guCAAGG--GCGCGGCG-----CGAGGCGUa---GA- -5'
12448 5' -60.4 NC_003324.1 + 41897 0.68 0.346435
Target:  5'- uGGUUCCCauaacgucgGCGUCGCaGUcgCCGCAUCc -3'
miRNA:   3'- gUCAAGGG---------CGCGGCG-CGa-GGCGUAGa -5'
12448 5' -60.4 NC_003324.1 + 12206 0.68 0.35455
Target:  5'- uCGGUgaaauUCCCG-GCCgaggccgcGCGCUCCGCgAUCa -3'
miRNA:   3'- -GUCA-----AGGGCgCGG--------CGCGAGGCG-UAGa -5'
12448 5' -60.4 NC_003324.1 + 5415 0.67 0.37969
Target:  5'- uGGcgCCCGCaccuGCgGCGCcgaguucuucUCCGCAUCg -3'
miRNA:   3'- gUCaaGGGCG----CGgCGCG----------AGGCGUAGa -5'
12448 5' -60.4 NC_003324.1 + 17531 0.67 0.400645
Target:  5'- gCAGUUCCCGCGUCG-GCgaucggaaccaaaggUCCgGCAUg- -3'
miRNA:   3'- -GUCAAGGGCGCGGCgCG---------------AGG-CGUAga -5'
12448 5' -60.4 NC_003324.1 + 47682 0.67 0.405997
Target:  5'- aCAGUU-CCGuCGgCGCGCUUCGCGg-- -3'
miRNA:   3'- -GUCAAgGGC-GCgGCGCGAGGCGUaga -5'
12448 5' -60.4 NC_003324.1 + 40159 0.67 0.371179
Target:  5'- cCGGaUUUCgGCGCCGCGUUCCGg---- -3'
miRNA:   3'- -GUC-AAGGgCGCGGCGCGAGGCguaga -5'
12448 5' -60.4 NC_003324.1 + 37521 0.66 0.424159
Target:  5'- ---aUCCCGCGCUGUGCgCgGCAa-- -3'
miRNA:   3'- gucaAGGGCGCGGCGCGaGgCGUaga -5'
12448 5' -60.4 NC_003324.1 + 30837 0.66 0.45229
Target:  5'- gCAGga-CCGCGcCCGUGCUUC-CGUCa -3'
miRNA:   3'- -GUCaagGGCGC-GGCGCGAGGcGUAGa -5'
12448 5' -60.4 NC_003324.1 + 22037 0.66 0.471599
Target:  5'- aGGUgcaUCGCGCCGCcgacgagaugGC-CCGCAUCc -3'
miRNA:   3'- gUCAag-GGCGCGGCG----------CGaGGCGUAGa -5'
12448 5' -60.4 NC_003324.1 + 1617 0.66 0.471599
Target:  5'- uCGGggCCauaGCGCCGCGCaccacugCCGCcggAUCc -3'
miRNA:   3'- -GUCaaGGg--CGCGGCGCGa------GGCG---UAGa -5'
12448 5' -60.4 NC_003324.1 + 10616 0.66 0.461891
Target:  5'- cCAGUcgCCCaacGCugGCCGUgGCUCCGUGUCg -3'
miRNA:   3'- -GUCAa-GGG---CG--CGGCG-CGAGGCGUAGa -5'
12448 5' -60.4 NC_003324.1 + 5545 0.66 0.433421
Target:  5'- aAGUUCCCGguugcCGCCGCaacCUUCGCcgCg -3'
miRNA:   3'- gUCAAGGGC-----GCGGCGc--GAGGCGuaGa -5'
12448 5' -60.4 NC_003324.1 + 23675 0.66 0.461891
Target:  5'- cCGGUaUCCacggCGCGCCGgGCUUCaCAUCg -3'
miRNA:   3'- -GUCA-AGG----GCGCGGCgCGAGGcGUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.