Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12450 | 3' | -52.2 | NC_003324.1 | + | 26686 | 0.66 | 0.906956 |
Target: 5'- uGcCCGUacCUUCGUCGCcuaugcccaagcgauGUUGuCCGAUCu -3' miRNA: 3'- gC-GGCA--GAAGCAGUG---------------UAAC-GGCUAGc -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 22143 | 0.66 | 0.904269 |
Target: 5'- uGCCGUCgUCGUCcGCcucGCCGA-CGc -3' miRNA: 3'- gCGGCAGaAGCAG-UGuaaCGGCUaGC- -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 35134 | 0.66 | 0.897357 |
Target: 5'- uCGCCGUugaccucagcgcCUUCGUCACcuucggcGCCG-UCGu -3' miRNA: 3'- -GCGGCA------------GAAGCAGUGuaa----CGGCuAGC- -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 23814 | 0.66 | 0.897357 |
Target: 5'- aCGUCGcagcUCUUCGUgACGUgcaGCCGG-CGg -3' miRNA: 3'- -GCGGC----AGAAGCAgUGUAa--CGGCUaGC- -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 14833 | 0.66 | 0.882725 |
Target: 5'- aGCCGUCgagcugcaGccCAUAUUGCUGAUUGa -3' miRNA: 3'- gCGGCAGaag-----Ca-GUGUAACGGCUAGC- -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 1516 | 0.66 | 0.882725 |
Target: 5'- gCGCCGUUUccuuugCGUCGCGcUGCuCGA-CGa -3' miRNA: 3'- -GCGGCAGAa-----GCAGUGUaACG-GCUaGC- -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 18495 | 0.66 | 0.875014 |
Target: 5'- aGCuCGUUggcgagCGUCACGgcGCgGGUCGg -3' miRNA: 3'- gCG-GCAGaa----GCAGUGUaaCGgCUAGC- -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 1481 | 0.66 | 0.875014 |
Target: 5'- cCGCCaUCUUCGUCuaugGCAUUGCuucCGGcCGg -3' miRNA: 3'- -GCGGcAGAAGCAG----UGUAACG---GCUaGC- -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 39255 | 0.67 | 0.867048 |
Target: 5'- cCGCCGUggCUgCGcCAgAaggUGCCGAUCGu -3' miRNA: 3'- -GCGGCA--GAaGCaGUgUa--ACGGCUAGC- -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 51150 | 0.67 | 0.867048 |
Target: 5'- aGCCGUCUUCaggCAgGUgaccUGCCGcGUCa -3' miRNA: 3'- gCGGCAGAAGca-GUgUA----ACGGC-UAGc -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 33598 | 0.67 | 0.858833 |
Target: 5'- uGCUG-CUUUGcgcagCGCGUUGCCGA-CGg -3' miRNA: 3'- gCGGCaGAAGCa----GUGUAACGGCUaGC- -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 19388 | 0.67 | 0.832779 |
Target: 5'- aCGCCGgCgcgCGUCGCGccgUGCaugaGGUCGg -3' miRNA: 3'- -GCGGCaGaa-GCAGUGUa--ACGg---CUAGC- -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 22223 | 0.68 | 0.795088 |
Target: 5'- cCGCCGcgcacCUUCGggaGCGgcaacgucUUGCCGAUCGc -3' miRNA: 3'- -GCGGCa----GAAGCag-UGU--------AACGGCUAGC- -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 29456 | 0.69 | 0.722923 |
Target: 5'- gGCCGUUgUCGUCACcgacgagGgcaagcccuaucaggUGCCGGUCGa -3' miRNA: 3'- gCGGCAGaAGCAGUG-------Ua--------------ACGGCUAGC- -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 1743 | 0.7 | 0.668388 |
Target: 5'- cCGCCGUCagCGUCAgCAggcgcagGCCGAguuUCGu -3' miRNA: 3'- -GCGGCAGaaGCAGU-GUaa-----CGGCU---AGC- -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 8324 | 0.71 | 0.646252 |
Target: 5'- aCGCCGUCggcgcUCGUUACggUGaCCG-UCGg -3' miRNA: 3'- -GCGGCAGa----AGCAGUGuaAC-GGCuAGC- -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 21496 | 0.71 | 0.624064 |
Target: 5'- uGCCG-CgccCGUCGCGUUGCUcaaGGUCGg -3' miRNA: 3'- gCGGCaGaa-GCAGUGUAACGG---CUAGC- -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 15977 | 0.71 | 0.622955 |
Target: 5'- uGCCG-CUUCGUCGCGUccugagaUGCagCGAUCu -3' miRNA: 3'- gCGGCaGAAGCAGUGUA-------ACG--GCUAGc -5' |
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12450 | 3' | -52.2 | NC_003324.1 | + | 29674 | 1.11 | 0.001957 |
Target: 5'- cCGCCGUCUUCGUCACAUUGCCGAUCGg -3' miRNA: 3'- -GCGGCAGAAGCAGUGUAACGGCUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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