miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12450 3' -52.2 NC_003324.1 + 26686 0.66 0.906956
Target:  5'- uGcCCGUacCUUCGUCGCcuaugcccaagcgauGUUGuCCGAUCu -3'
miRNA:   3'- gC-GGCA--GAAGCAGUG---------------UAAC-GGCUAGc -5'
12450 3' -52.2 NC_003324.1 + 22143 0.66 0.904269
Target:  5'- uGCCGUCgUCGUCcGCcucGCCGA-CGc -3'
miRNA:   3'- gCGGCAGaAGCAG-UGuaaCGGCUaGC- -5'
12450 3' -52.2 NC_003324.1 + 35134 0.66 0.897357
Target:  5'- uCGCCGUugaccucagcgcCUUCGUCACcuucggcGCCG-UCGu -3'
miRNA:   3'- -GCGGCA------------GAAGCAGUGuaa----CGGCuAGC- -5'
12450 3' -52.2 NC_003324.1 + 23814 0.66 0.897357
Target:  5'- aCGUCGcagcUCUUCGUgACGUgcaGCCGG-CGg -3'
miRNA:   3'- -GCGGC----AGAAGCAgUGUAa--CGGCUaGC- -5'
12450 3' -52.2 NC_003324.1 + 14833 0.66 0.882725
Target:  5'- aGCCGUCgagcugcaGccCAUAUUGCUGAUUGa -3'
miRNA:   3'- gCGGCAGaag-----Ca-GUGUAACGGCUAGC- -5'
12450 3' -52.2 NC_003324.1 + 1516 0.66 0.882725
Target:  5'- gCGCCGUUUccuuugCGUCGCGcUGCuCGA-CGa -3'
miRNA:   3'- -GCGGCAGAa-----GCAGUGUaACG-GCUaGC- -5'
12450 3' -52.2 NC_003324.1 + 1481 0.66 0.875014
Target:  5'- cCGCCaUCUUCGUCuaugGCAUUGCuucCGGcCGg -3'
miRNA:   3'- -GCGGcAGAAGCAG----UGUAACG---GCUaGC- -5'
12450 3' -52.2 NC_003324.1 + 18495 0.66 0.875014
Target:  5'- aGCuCGUUggcgagCGUCACGgcGCgGGUCGg -3'
miRNA:   3'- gCG-GCAGaa----GCAGUGUaaCGgCUAGC- -5'
12450 3' -52.2 NC_003324.1 + 51150 0.67 0.867048
Target:  5'- aGCCGUCUUCaggCAgGUgaccUGCCGcGUCa -3'
miRNA:   3'- gCGGCAGAAGca-GUgUA----ACGGC-UAGc -5'
12450 3' -52.2 NC_003324.1 + 39255 0.67 0.867048
Target:  5'- cCGCCGUggCUgCGcCAgAaggUGCCGAUCGu -3'
miRNA:   3'- -GCGGCA--GAaGCaGUgUa--ACGGCUAGC- -5'
12450 3' -52.2 NC_003324.1 + 33598 0.67 0.858833
Target:  5'- uGCUG-CUUUGcgcagCGCGUUGCCGA-CGg -3'
miRNA:   3'- gCGGCaGAAGCa----GUGUAACGGCUaGC- -5'
12450 3' -52.2 NC_003324.1 + 19388 0.67 0.832779
Target:  5'- aCGCCGgCgcgCGUCGCGccgUGCaugaGGUCGg -3'
miRNA:   3'- -GCGGCaGaa-GCAGUGUa--ACGg---CUAGC- -5'
12450 3' -52.2 NC_003324.1 + 22223 0.68 0.795088
Target:  5'- cCGCCGcgcacCUUCGggaGCGgcaacgucUUGCCGAUCGc -3'
miRNA:   3'- -GCGGCa----GAAGCag-UGU--------AACGGCUAGC- -5'
12450 3' -52.2 NC_003324.1 + 29456 0.69 0.722923
Target:  5'- gGCCGUUgUCGUCACcgacgagGgcaagcccuaucaggUGCCGGUCGa -3'
miRNA:   3'- gCGGCAGaAGCAGUG-------Ua--------------ACGGCUAGC- -5'
12450 3' -52.2 NC_003324.1 + 1743 0.7 0.668388
Target:  5'- cCGCCGUCagCGUCAgCAggcgcagGCCGAguuUCGu -3'
miRNA:   3'- -GCGGCAGaaGCAGU-GUaa-----CGGCU---AGC- -5'
12450 3' -52.2 NC_003324.1 + 8324 0.71 0.646252
Target:  5'- aCGCCGUCggcgcUCGUUACggUGaCCG-UCGg -3'
miRNA:   3'- -GCGGCAGa----AGCAGUGuaAC-GGCuAGC- -5'
12450 3' -52.2 NC_003324.1 + 21496 0.71 0.624064
Target:  5'- uGCCG-CgccCGUCGCGUUGCUcaaGGUCGg -3'
miRNA:   3'- gCGGCaGaa-GCAGUGUAACGG---CUAGC- -5'
12450 3' -52.2 NC_003324.1 + 15977 0.71 0.622955
Target:  5'- uGCCG-CUUCGUCGCGUccugagaUGCagCGAUCu -3'
miRNA:   3'- gCGGCaGAAGCAGUGUA-------ACG--GCUAGc -5'
12450 3' -52.2 NC_003324.1 + 29674 1.11 0.001957
Target:  5'- cCGCCGUCUUCGUCACAUUGCCGAUCGg -3'
miRNA:   3'- -GCGGCAGAAGCAGUGUAACGGCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.