miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12450 5' -53.2 NC_003324.1 + 29103 0.65 0.8453
Target:  5'- ---aUCGGUACCGC-GUCGAgcgcgcugcuaaggAAGCGAa -3'
miRNA:   3'- aagcGGCCAUGGCGaCAGCU--------------UUUGCU- -5'
12450 5' -53.2 NC_003324.1 + 39579 0.66 0.839113
Target:  5'- uUUgGCCGGguucucUGCCGacgaGUUGAAGGCGAa -3'
miRNA:   3'- -AAgCGGCC------AUGGCga--CAGCUUUUGCU- -5'
12450 5' -53.2 NC_003324.1 + 8134 0.66 0.839113
Target:  5'- -cCGCCGGgcaGCUGCgcgcUCGAcuGCGAu -3'
miRNA:   3'- aaGCGGCCa--UGGCGac--AGCUuuUGCU- -5'
12450 5' -53.2 NC_003324.1 + 9387 0.66 0.830085
Target:  5'- -aUGuuGGUGCCGCcacCGAuGACGAg -3'
miRNA:   3'- aaGCggCCAUGGCGacaGCUuUUGCU- -5'
12450 5' -53.2 NC_003324.1 + 15174 0.66 0.805637
Target:  5'- aUCGCCGGUuccgcagaucaaacCCGCccgUGacggCGggGACGAa -3'
miRNA:   3'- aAGCGGCCAu-------------GGCG---ACa---GCuuUUGCU- -5'
12450 5' -53.2 NC_003324.1 + 41628 0.67 0.781944
Target:  5'- --gGCCcGcGCCGCUGUCGuuAGCGu -3'
miRNA:   3'- aagCGGcCaUGGCGACAGCuuUUGCu -5'
12450 5' -53.2 NC_003324.1 + 49489 0.67 0.771791
Target:  5'- -gUGCCGGU-CCGCaa-CGAGGGCGGc -3'
miRNA:   3'- aaGCGGCCAuGGCGacaGCUUUUGCU- -5'
12450 5' -53.2 NC_003324.1 + 24077 0.67 0.771791
Target:  5'- cUCGCCGGUG-CGCUG-CGcc-ACGGu -3'
miRNA:   3'- aAGCGGCCAUgGCGACaGCuuuUGCU- -5'
12450 5' -53.2 NC_003324.1 + 43708 0.68 0.739429
Target:  5'- gUCGuCCGGUACCGcCUGcugccaaUCGGGAucagggucGCGAc -3'
miRNA:   3'- aAGC-GGCCAUGGC-GAC-------AGCUUU--------UGCU- -5'
12450 5' -53.2 NC_003324.1 + 29264 0.68 0.729817
Target:  5'- aUCGCCGGgcUCGCgcUCGAucGGCGGa -3'
miRNA:   3'- aAGCGGCCauGGCGacAGCUu-UUGCU- -5'
12450 5' -53.2 NC_003324.1 + 32556 0.68 0.729817
Target:  5'- aUCGCCGagGCUGCcGgCGAAGGCGAc -3'
miRNA:   3'- aAGCGGCcaUGGCGaCaGCUUUUGCU- -5'
12450 5' -53.2 NC_003324.1 + 45909 0.68 0.70818
Target:  5'- aUUCGgCGccGCCGCU-UCGGAAGCGAa -3'
miRNA:   3'- -AAGCgGCcaUGGCGAcAGCUUUUGCU- -5'
12450 5' -53.2 NC_003324.1 + 56586 0.68 0.69724
Target:  5'- -aCGCCGcUAUCGCUGaCGAAuuGACGGc -3'
miRNA:   3'- aaGCGGCcAUGGCGACaGCUU--UUGCU- -5'
12450 5' -53.2 NC_003324.1 + 43836 0.69 0.675177
Target:  5'- -cCGCCGG-AUCGUUGUCGAugccccCGAu -3'
miRNA:   3'- aaGCGGCCaUGGCGACAGCUuuu---GCU- -5'
12450 5' -53.2 NC_003324.1 + 11243 0.69 0.662966
Target:  5'- aUCaGCCGGacacggcUACCGUgguUGUCGGAAAUGGc -3'
miRNA:   3'- aAG-CGGCC-------AUGGCG---ACAGCUUUUGCU- -5'
12450 5' -53.2 NC_003324.1 + 27836 0.69 0.641797
Target:  5'- -cCGCUGGUGuaGUUGUCGAgguAGGCGGc -3'
miRNA:   3'- aaGCGGCCAUggCGACAGCU---UUUGCU- -5'
12450 5' -53.2 NC_003324.1 + 13897 0.69 0.630638
Target:  5'- aUCGCauCGGUGuuGUUcUCGGAGACGAa -3'
miRNA:   3'- aAGCG--GCCAUggCGAcAGCUUUUGCU- -5'
12450 5' -53.2 NC_003324.1 + 20382 0.71 0.531402
Target:  5'- aUCGCCGGccgUGCCGUauUCGAcAACGGa -3'
miRNA:   3'- aAGCGGCC---AUGGCGacAGCUuUUGCU- -5'
12450 5' -53.2 NC_003324.1 + 29713 1.07 0.002449
Target:  5'- gUUCGCCGGUACCGCUGUCGAAAACGAu -3'
miRNA:   3'- -AAGCGGCCAUGGCGACAGCUUUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.