Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12454 | 3' | -64.7 | NC_003324.1 | + | 52387 | 0.71 | 0.115375 |
Target: 5'- uGCUGGGGuCGCaGACGCCgGCC-GCCc -3' miRNA: 3'- -UGACCCCcGCGgUUGCGGaCGGcCGG- -5' |
|||||||
12454 | 3' | -64.7 | NC_003324.1 | + | 31239 | 0.72 | 0.095749 |
Target: 5'- ------aGCGCCAGCGCC-GCCGGCCg -3' miRNA: 3'- ugaccccCGCGGUUGCGGaCGGCCGG- -5' |
|||||||
12454 | 3' | -64.7 | NC_003324.1 | + | 3636 | 0.73 | 0.093217 |
Target: 5'- -aUGGcGGGCGCCAccgaaGCGCCguuugcaGCCGGUUc -3' miRNA: 3'- ugACC-CCCGCGGU-----UGCGGa------CGGCCGG- -5' |
|||||||
12454 | 3' | -64.7 | NC_003324.1 | + | 38988 | 0.73 | 0.090748 |
Target: 5'- -aUGGaGGCGCUGGCGCUUGCCgaGGCUg -3' miRNA: 3'- ugACCcCCGCGGUUGCGGACGG--CCGG- -5' |
|||||||
12454 | 3' | -64.7 | NC_003324.1 | + | 31762 | 1.1 | 0.000116 |
Target: 5'- aACUGGGGGCGCCAACGCCUGCCGGCCu -3' miRNA: 3'- -UGACCCCCGCGGUUGCGGACGGCCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home