miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12454 5' -53 NC_003324.1 + 6531 0.69 0.693464
Target:  5'- ----aCGGCAGgGUCuGCGAGCUAu- -3'
miRNA:   3'- cauaaGCCGUUgCAGcCGCUCGGUuc -5'
12454 5' -53 NC_003324.1 + 49285 0.69 0.682424
Target:  5'- -cGUUCGGau-CGUCGGCaggaagaucgagGAGCCGAu -3'
miRNA:   3'- caUAAGCCguuGCAGCCG------------CUCGGUUc -5'
12454 5' -53 NC_003324.1 + 22242 0.7 0.582149
Target:  5'- ----gCGGCAACGUcuugccgaucgCGGCGAGCUg-- -3'
miRNA:   3'- cauaaGCCGUUGCA-----------GCCGCUCGGuuc -5'
12454 5' -53 NC_003324.1 + 15238 0.7 0.582149
Target:  5'- ----cCGGCGAUGgagaucggCGGCGAGCCu-- -3'
miRNA:   3'- cauaaGCCGUUGCa-------GCCGCUCGGuuc -5'
12454 5' -53 NC_003324.1 + 49991 0.7 0.582149
Target:  5'- -----gGGCAGCGaaGGCGAGCaCGAGc -3'
miRNA:   3'- cauaagCCGUUGCagCCGCUCG-GUUC- -5'
12454 5' -53 NC_003324.1 + 50199 0.71 0.549147
Target:  5'- ---aUCaGCGACaaGUCGGCGAGCCu-- -3'
miRNA:   3'- cauaAGcCGUUG--CAGCCGCUCGGuuc -5'
12454 5' -53 NC_003324.1 + 22685 0.71 0.538271
Target:  5'- ---cUCGGCAACG-CGGCaggcAGCCAAa -3'
miRNA:   3'- cauaAGCCGUUGCaGCCGc---UCGGUUc -5'
12454 5' -53 NC_003324.1 + 30985 0.72 0.516749
Target:  5'- ----cCGGCGugGUCGGauuGGGCCAGu -3'
miRNA:   3'- cauaaGCCGUugCAGCCg--CUCGGUUc -5'
12454 5' -53 NC_003324.1 + 30262 0.72 0.485145
Target:  5'- ---aUCGGCGAUGau-GCGGGCCAAGg -3'
miRNA:   3'- cauaAGCCGUUGCagcCGCUCGGUUC- -5'
12454 5' -53 NC_003324.1 + 44576 0.74 0.405854
Target:  5'- -cGUUCGGCAGCGacaCGGCG-GCgAGGa -3'
miRNA:   3'- caUAAGCCGUUGCa--GCCGCuCGgUUC- -5'
12454 5' -53 NC_003324.1 + 33061 0.74 0.396525
Target:  5'- -gGUUCGGCAuugGCGaCGGCGAGCa--- -3'
miRNA:   3'- caUAAGCCGU---UGCaGCCGCUCGguuc -5'
12454 5' -53 NC_003324.1 + 23176 0.76 0.311149
Target:  5'- ----aCGGUAugGUCGGCGAGCgCGGu -3'
miRNA:   3'- cauaaGCCGUugCAGCCGCUCG-GUUc -5'
12454 5' -53 NC_003324.1 + 23779 0.76 0.281133
Target:  5'- -gAUUCGGCGGCGcguucggccUCGGCGAGCUu-- -3'
miRNA:   3'- caUAAGCCGUUGC---------AGCCGCUCGGuuc -5'
12454 5' -53 NC_003324.1 + 35463 0.86 0.065741
Target:  5'- ---gUCGGCGAUGUCGGCGAGCguGGg -3'
miRNA:   3'- cauaAGCCGUUGCAGCCGCUCGguUC- -5'
12454 5' -53 NC_003324.1 + 31799 1.08 0.001943
Target:  5'- cGUAUUCGGCAACGUCGGCGAGCCAAGc -3'
miRNA:   3'- -CAUAAGCCGUUGCAGCCGCUCGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.