miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12455 3' -54.4 NC_003324.1 + 10349 0.65 0.779218
Target:  5'- cUCGAccAUGGCUacagCUUuguccggaccuucCGGCaUCGCUGCGa -3'
miRNA:   3'- -AGUU--UACCGA----GAA-------------GCCGgAGCGACGC- -5'
12455 3' -54.4 NC_003324.1 + 3031 0.66 0.770084
Target:  5'- gUCGAucuGCUCUUgGGCCuguUCGCggGCGc -3'
miRNA:   3'- -AGUUuacCGAGAAgCCGG---AGCGa-CGC- -5'
12455 3' -54.4 NC_003324.1 + 29893 0.66 0.759796
Target:  5'- -----cGGCgcgaUCUUCGGCg-CGCUGCu -3'
miRNA:   3'- aguuuaCCG----AGAAGCCGgaGCGACGc -5'
12455 3' -54.4 NC_003324.1 + 27850 0.66 0.759796
Target:  5'- gUCGAGguaGGCggcgcgcgCUUCGuCCUCGCUGgCGu -3'
miRNA:   3'- -AGUUUa--CCGa-------GAAGCcGGAGCGAC-GC- -5'
12455 3' -54.4 NC_003324.1 + 43251 0.66 0.728182
Target:  5'- gUCGAGgcUGGCUCggaUUGGCgCUCGCU-Ca -3'
miRNA:   3'- -AGUUU--ACCGAGa--AGCCG-GAGCGAcGc -5'
12455 3' -54.4 NC_003324.1 + 30721 0.67 0.717432
Target:  5'- cCAAuucuUGGCg--UCGGCCgccUGCUGCu -3'
miRNA:   3'- aGUUu---ACCGagaAGCCGGa--GCGACGc -5'
12455 3' -54.4 NC_003324.1 + 30518 0.67 0.695686
Target:  5'- gCGAccGUGGCgacCUUCGcuGCCgcugcCGCUGCGa -3'
miRNA:   3'- aGUU--UACCGa--GAAGC--CGGa----GCGACGC- -5'
12455 3' -54.4 NC_003324.1 + 51798 0.68 0.640419
Target:  5'- -----cGGCgauugCgUCGGCCUCGCUGa- -3'
miRNA:   3'- aguuuaCCGa----GaAGCCGGAGCGACgc -5'
12455 3' -54.4 NC_003324.1 + 27346 0.68 0.6293
Target:  5'- gUCGAuagGGUUg--UGGCCgUCGCUGCGg -3'
miRNA:   3'- -AGUUua-CCGAgaaGCCGG-AGCGACGC- -5'
12455 3' -54.4 NC_003324.1 + 12010 0.69 0.584946
Target:  5'- gUCAc---GCUCUcCGGCUUUGCUGCa -3'
miRNA:   3'- -AGUuuacCGAGAaGCCGGAGCGACGc -5'
12455 3' -54.4 NC_003324.1 + 4829 0.7 0.509167
Target:  5'- -aAGAUGGCguugCUUCGGCCUucCGCcGUa -3'
miRNA:   3'- agUUUACCGa---GAAGCCGGA--GCGaCGc -5'
12455 3' -54.4 NC_003324.1 + 26160 0.7 0.498655
Target:  5'- ----cUGGCggccugcaucauUCUgucggCGGUCUCGCUGCGg -3'
miRNA:   3'- aguuuACCG------------AGAa----GCCGGAGCGACGC- -5'
12455 3' -54.4 NC_003324.1 + 56391 0.71 0.44767
Target:  5'- uUCAAguauGUGGCgCUUgCGGCCUCGaUUGCu -3'
miRNA:   3'- -AGUU----UACCGaGAA-GCCGGAGC-GACGc -5'
12455 3' -54.4 NC_003324.1 + 32072 1.09 0.001245
Target:  5'- gUCAAAUGGCUCUUCGGCCUCGCUGCGc -3'
miRNA:   3'- -AGUUUACCGAGAAGCCGGAGCGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.