miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12456 3' -53.3 NC_003324.1 + 29954 0.66 0.80715
Target:  5'- ----cGAggGGCGUccUGcGUAGCGGCGGCa -3'
miRNA:   3'- aagaaCUa-CUGCG--AC-CGUUGCCGUCG- -5'
12456 3' -53.3 NC_003324.1 + 51542 0.66 0.797277
Target:  5'- aUCgauaUGAUGccaACuCUGGUGACGGaCAGCa -3'
miRNA:   3'- aAGa---ACUAC---UGcGACCGUUGCC-GUCG- -5'
12456 3' -53.3 NC_003324.1 + 14522 0.66 0.787221
Target:  5'- -gCUUG--GACGCcGGCAugGGCccagAGCc -3'
miRNA:   3'- aaGAACuaCUGCGaCCGUugCCG----UCG- -5'
12456 3' -53.3 NC_003324.1 + 13161 0.66 0.787221
Target:  5'- ----cGgcGGCGgUcGGCGGCGGCGGUa -3'
miRNA:   3'- aagaaCuaCUGCgA-CCGUUGCCGUCG- -5'
12456 3' -53.3 NC_003324.1 + 2521 0.66 0.787221
Target:  5'- --gUUGGUGGggaacaagcCGCcGGCGuCGGCGGCu -3'
miRNA:   3'- aagAACUACU---------GCGaCCGUuGCCGUCG- -5'
12456 3' -53.3 NC_003324.1 + 50431 0.66 0.787221
Target:  5'- -------aGGCGCUgGGCGugGuGCAGCu -3'
miRNA:   3'- aagaacuaCUGCGA-CCGUugC-CGUCG- -5'
12456 3' -53.3 NC_003324.1 + 17560 0.66 0.776995
Target:  5'- cUCUcucaGACGCUcGGCGcgACGGCAGg -3'
miRNA:   3'- aAGAacuaCUGCGA-CCGU--UGCCGUCg -5'
12456 3' -53.3 NC_003324.1 + 35604 0.66 0.776995
Target:  5'- cUUCUUGccGAUGUcGGCuucugcuGCGcGCAGCa -3'
miRNA:   3'- -AAGAACuaCUGCGaCCGu------UGC-CGUCG- -5'
12456 3' -53.3 NC_003324.1 + 45357 0.66 0.776995
Target:  5'- -aCUUGAa---GCaGGCGGCGaGCAGCg -3'
miRNA:   3'- aaGAACUacugCGaCCGUUGC-CGUCG- -5'
12456 3' -53.3 NC_003324.1 + 17172 0.66 0.756076
Target:  5'- --aUUGAcgaGGCGCUGGCGcgucugucggacGCGGCuuucGGCg -3'
miRNA:   3'- aagAACUa--CUGCGACCGU------------UGCCG----UCG- -5'
12456 3' -53.3 NC_003324.1 + 23990 0.67 0.74541
Target:  5'- -gCUcGAc-GCGCUGGUAggGCGGCGGUa -3'
miRNA:   3'- aaGAaCUacUGCGACCGU--UGCCGUCG- -5'
12456 3' -53.3 NC_003324.1 + 10588 0.67 0.723724
Target:  5'- ----aGcgGAUGCaGGCAACGGCAa- -3'
miRNA:   3'- aagaaCuaCUGCGaCCGUUGCCGUcg -5'
12456 3' -53.3 NC_003324.1 + 24077 0.67 0.723724
Target:  5'- cUCgccGGUG-CGCUGcGCcACGGUGGCg -3'
miRNA:   3'- aAGaa-CUACuGCGAC-CGuUGCCGUCG- -5'
12456 3' -53.3 NC_003324.1 + 45208 0.67 0.723724
Target:  5'- gUUgUUGAU-ACGCcGGCAGCGGUcgagAGCc -3'
miRNA:   3'- -AAgAACUAcUGCGaCCGUUGCCG----UCG- -5'
12456 3' -53.3 NC_003324.1 + 2682 0.67 0.720436
Target:  5'- ----cGGUGGcCGCUucGGCAagggcacgaugucgGCGGCGGCa -3'
miRNA:   3'- aagaaCUACU-GCGA--CCGU--------------UGCCGUCG- -5'
12456 3' -53.3 NC_003324.1 + 25265 0.67 0.701652
Target:  5'- gUCUcaugccUGGUGA-GCUGcGCGACGGC-GCc -3'
miRNA:   3'- aAGA------ACUACUgCGAC-CGUUGCCGuCG- -5'
12456 3' -53.3 NC_003324.1 + 21938 0.68 0.679293
Target:  5'- cUUCUUGugGAUGCgGGCcucucguCGGCGGCg -3'
miRNA:   3'- -AAGAACuaCUGCGaCCGuu-----GCCGUCG- -5'
12456 3' -53.3 NC_003324.1 + 44566 0.68 0.679293
Target:  5'- ---gUGAUGAcccCGUUcGGCAgcgacACGGCGGCg -3'
miRNA:   3'- aagaACUACU---GCGA-CCGU-----UGCCGUCG- -5'
12456 3' -53.3 NC_003324.1 + 33348 0.68 0.679293
Target:  5'- ----cGAUGACuaUGGCGAUGGCGu- -3'
miRNA:   3'- aagaaCUACUGcgACCGUUGCCGUcg -5'
12456 3' -53.3 NC_003324.1 + 35193 0.68 0.668037
Target:  5'- ----cGAcGGCGCUGGCGacgACGGaaaGGCa -3'
miRNA:   3'- aagaaCUaCUGCGACCGU---UGCCg--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.