Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12457 | 3' | -50.7 | NC_003324.1 | + | 32649 | 1.12 | 0.001764 |
Target: 5'- cCAAUAACGAUAGGCAUGCGUGCGGGCu -3' miRNA: 3'- -GUUAUUGCUAUCCGUACGCACGCCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 20604 | 0.76 | 0.398382 |
Target: 5'- -----cUGAUGGGCGcuUGCGgucgGCGGGCa -3' miRNA: 3'- guuauuGCUAUCCGU--ACGCa---CGCCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 56530 | 0.75 | 0.457621 |
Target: 5'- ---cAACauuuGGCAUGCGaUGCGGGCg -3' miRNA: 3'- guuaUUGcuauCCGUACGC-ACGCCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 7461 | 0.74 | 0.499623 |
Target: 5'- ---aAGCc--GGGCA-GCGUGCGGGCa -3' miRNA: 3'- guuaUUGcuaUCCGUaCGCACGCCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 56654 | 0.74 | 0.510393 |
Target: 5'- gCGAUAGCGGcguUAugggcggcGGCAUGgGUcGCGGGCa -3' miRNA: 3'- -GUUAUUGCU---AU--------CCGUACgCA-CGCCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 36279 | 0.73 | 0.554359 |
Target: 5'- --uUGACGAUGauGGCAU-CGggGCGGGCg -3' miRNA: 3'- guuAUUGCUAU--CCGUAcGCa-CGCCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 30140 | 0.7 | 0.723515 |
Target: 5'- cCGGUGucGCGAccGGCG-GCGUGaUGGGCg -3' miRNA: 3'- -GUUAU--UGCUauCCGUaCGCAC-GCCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 38565 | 0.7 | 0.760264 |
Target: 5'- ---gGGCGAUAgGGCAcgcGCGUgaugcgguucugcgaGCGGGCg -3' miRNA: 3'- guuaUUGCUAU-CCGUa--CGCA---------------CGCCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 24998 | 0.68 | 0.835828 |
Target: 5'- ----uGCGAccGGGCG-GCGUGCuGGCg -3' miRNA: 3'- guuauUGCUa-UCCGUaCGCACGcCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 24009 | 0.68 | 0.853713 |
Target: 5'- ---cGGCGGUAgGGCugcUGCGUGCGcuuggagaagauGGCg -3' miRNA: 3'- guuaUUGCUAU-CCGu--ACGCACGC------------CCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 48989 | 0.68 | 0.853713 |
Target: 5'- ---cGACGAUcuuguGGCGggugGCGgaguccuggaUGCGGGCg -3' miRNA: 3'- guuaUUGCUAu----CCGUa---CGC----------ACGCCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 17873 | 0.67 | 0.869786 |
Target: 5'- ----cGCGAUAGaGCAUGUugauguuGUGCuGGCg -3' miRNA: 3'- guuauUGCUAUC-CGUACG-------CACGcCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 9664 | 0.67 | 0.878659 |
Target: 5'- ----cGCGcUGGGCG-GCGUGgggcCGGGCg -3' miRNA: 3'- guuauUGCuAUCCGUaCGCAC----GCCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 28697 | 0.67 | 0.886441 |
Target: 5'- ---cAACGAUccGGGCcacgaggGCGacaGCGGGCg -3' miRNA: 3'- guuaUUGCUA--UCCGua-----CGCa--CGCCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 29951 | 0.67 | 0.901165 |
Target: 5'- ---gGGCGAgGGGCGuccUGCGUaGCGGcgGCa -3' miRNA: 3'- guuaUUGCUaUCCGU---ACGCA-CGCC--CG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 18014 | 0.67 | 0.901165 |
Target: 5'- gGAUAcCGAUuGGCcgGCGccaCGGGCc -3' miRNA: 3'- gUUAUuGCUAuCCGuaCGCac-GCCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 24396 | 0.66 | 0.908775 |
Target: 5'- ---aGAUGGUcGGGCAUGCGgauaugcacugcgccGuCGGGCg -3' miRNA: 3'- guuaUUGCUA-UCCGUACGCa--------------C-GCCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 30313 | 0.66 | 0.914739 |
Target: 5'- ---cGGCGGU-GGCGUcgcucggcGCGUGCuGGCu -3' miRNA: 3'- guuaUUGCUAuCCGUA--------CGCACGcCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 50431 | 0.66 | 0.921087 |
Target: 5'- ---aGGCGcUGGGCGUG-GUGCagcucgcaGGGCu -3' miRNA: 3'- guuaUUGCuAUCCGUACgCACG--------CCCG- -5' |
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12457 | 3' | -50.7 | NC_003324.1 | + | 1902 | 0.66 | 0.921087 |
Target: 5'- ---gAACGGUAGGCAUGCacacaagccaauGUcagagaaugcGCuGGGCu -3' miRNA: 3'- guuaUUGCUAUCCGUACG------------CA----------CG-CCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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