miRNA display CGI


Results 21 - 27 of 27 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12457 5' -55.7 NC_003324.1 + 42895 0.7 0.457651
Target:  5'- -cGACCGagaACgaccCA-GCGCGGGGCGACc -3'
miRNA:   3'- cuCUGGCg--UGa---GUaCGCGCCUUGCUG- -5'
12457 5' -55.7 NC_003324.1 + 28552 0.7 0.438054
Target:  5'- aAGGCCaCGCUCGUGaCGUGGAACa-- -3'
miRNA:   3'- cUCUGGcGUGAGUAC-GCGCCUUGcug -5'
12457 5' -55.7 NC_003324.1 + 8597 0.71 0.400355
Target:  5'- aGGACCGCG-UCAcggGCGCGGuuuCGACc -3'
miRNA:   3'- cUCUGGCGUgAGUa--CGCGCCuu-GCUG- -5'
12457 5' -55.7 NC_003324.1 + 50945 0.73 0.307983
Target:  5'- uGAGGCCuC-CUUcgagGUGCGCGGAACGAUc -3'
miRNA:   3'- -CUCUGGcGuGAG----UACGCGCCUUGCUG- -5'
12457 5' -55.7 NC_003324.1 + 7427 0.74 0.277974
Target:  5'- uGAGuaccaACCGCAucgucagcgugccCUCGgcGCGCGGAACGACg -3'
miRNA:   3'- -CUC-----UGGCGU-------------GAGUa-CGCGCCUUGCUG- -5'
12457 5' -55.7 NC_003324.1 + 43406 0.75 0.226792
Target:  5'- -uGACCGCAgUCGUGgGUGGucucGGCGACg -3'
miRNA:   3'- cuCUGGCGUgAGUACgCGCC----UUGCUG- -5'
12457 5' -55.7 NC_003324.1 + 32683 1.1 0.000758
Target:  5'- aGAGACCGCACUCAUGCGCGGAACGACa -3'
miRNA:   3'- -CUCUGGCGUGAGUACGCGCCUUGCUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.