miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12458 5' -49.7 NC_003324.1 + 33710 1.12 0.003138
Target:  5'- uCCAAUCCUUCGGUGACGAUGACUCGAg -3'
miRNA:   3'- -GGUUAGGAAGCCACUGCUACUGAGCU- -5'
12458 5' -49.7 NC_003324.1 + 22952 0.72 0.745627
Target:  5'- uCCAGUCUc-CGGUGGCGAUG-CgagCGAa -3'
miRNA:   3'- -GGUUAGGaaGCCACUGCUACuGa--GCU- -5'
12458 5' -49.7 NC_003324.1 + 4192 0.72 0.756198
Target:  5'- gCCGA-CCUaCGGcGACGAgcGACUCGAg -3'
miRNA:   3'- -GGUUaGGAaGCCaCUGCUa-CUGAGCU- -5'
12458 5' -49.7 NC_003324.1 + 38799 0.72 0.756198
Target:  5'- -uGGUCCUUCGGcucGAUGAUGACgccgugCGGg -3'
miRNA:   3'- ggUUAGGAAGCCa--CUGCUACUGa-----GCU- -5'
12458 5' -49.7 NC_003324.1 + 12659 0.68 0.925684
Target:  5'- aCAAcCUUUCGGcgucUGGCGAacgcaucgcUGGCUCGAu -3'
miRNA:   3'- gGUUaGGAAGCC----ACUGCU---------ACUGAGCU- -5'
12458 5' -49.7 NC_003324.1 + 42519 0.66 0.970628
Target:  5'- gCCGAU---UCGGUGACGGguGCUCGc -3'
miRNA:   3'- -GGUUAggaAGCCACUGCUacUGAGCu -5'
12458 5' -49.7 NC_003324.1 + 30563 0.68 0.913311
Target:  5'- uCCGAgggCCUgcUCGGcGGCGccGAUUCGAc -3'
miRNA:   3'- -GGUUa--GGA--AGCCaCUGCuaCUGAGCU- -5'
12458 5' -49.7 NC_003324.1 + 49242 0.71 0.806835
Target:  5'- gUCGAUggugCCUUCGGUGGCGAcguUGAUcaccucaaUCGAg -3'
miRNA:   3'- -GGUUA----GGAAGCCACUGCU---ACUG--------AGCU- -5'
12458 5' -49.7 NC_003324.1 + 17004 0.73 0.668955
Target:  5'- aCCGAUCUaUCGGUGACGcUGGCa--- -3'
miRNA:   3'- -GGUUAGGaAGCCACUGCuACUGagcu -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.