miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12459 5' -48.8 NC_003324.1 + 33849 1.11 0.003846
Target:  5'- gGCAAUCGUAGAGGUCCACAUCGAUGUa -3'
miRNA:   3'- -CGUUAGCAUCUCCAGGUGUAGCUACA- -5'
12459 5' -48.8 NC_003324.1 + 29959 0.71 0.812465
Target:  5'- gGCGuccugCGUAGcggcggcagccGGGUCCGCAUCGAUc- -3'
miRNA:   3'- -CGUua---GCAUC-----------UCCAGGUGUAGCUAca -5'
12459 5' -48.8 NC_003324.1 + 41436 0.71 0.830659
Target:  5'- aGCccUCGUAGAGGUCCcaaaccgaaggcgGCAUUGGUa- -3'
miRNA:   3'- -CGuuAGCAUCUCCAGG-------------UGUAGCUAca -5'
12459 5' -48.8 NC_003324.1 + 47161 0.7 0.858558
Target:  5'- cGCAcgUGUcGGGGUCUACuuggCGAUGg -3'
miRNA:   3'- -CGUuaGCAuCUCCAGGUGua--GCUACa -5'
12459 5' -48.8 NC_003324.1 + 41918 0.69 0.90537
Target:  5'- cGCAGUCGccgcauccGGAGGUaCCGCGUuccCGAUGc -3'
miRNA:   3'- -CGUUAGCa-------UCUCCA-GGUGUA---GCUACa -5'
12459 5' -48.8 NC_003324.1 + 47470 0.68 0.930791
Target:  5'- gGCGAUgCGUAGAuGGUCCuGCAUCa---- -3'
miRNA:   3'- -CGUUA-GCAUCU-CCAGG-UGUAGcuaca -5'
12459 5' -48.8 NC_003324.1 + 43410 0.67 0.946721
Target:  5'- cGCAGUCGUGGGuGGUCUcgGCGacggCGAaauUGUa -3'
miRNA:   3'- -CGUUAGCAUCU-CCAGG--UGUa---GCU---ACA- -5'
12459 5' -48.8 NC_003324.1 + 36936 0.67 0.951442
Target:  5'- aGCGuccGUCGUcGAGGUCCAgcUCGGUc- -3'
miRNA:   3'- -CGU---UAGCAuCUCCAGGUguAGCUAca -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.