miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12460 3' -58.7 NC_003324.1 + 42368 0.66 0.512634
Target:  5'- aGGCg-GCGCACUCAgcguUGCCgacccgcgCCCUGUa -3'
miRNA:   3'- -UUGagCGCGUGAGU----GCGGa-------GGGACAg -5'
12460 3' -58.7 NC_003324.1 + 43681 0.66 0.502306
Target:  5'- gAACUCGCcauGCGCUgCGCGCCgaa-UGUCg -3'
miRNA:   3'- -UUGAGCG---CGUGA-GUGCGGagggACAG- -5'
12460 3' -58.7 NC_003324.1 + 20277 0.66 0.481933
Target:  5'- uAC-CGgGCGCguuacgCGCGCCUCUCUGa- -3'
miRNA:   3'- uUGaGCgCGUGa-----GUGCGGAGGGACag -5'
12460 3' -58.7 NC_003324.1 + 13470 0.68 0.404855
Target:  5'- uGCUCGcCGaugucaaagaGCUUaauaaGCGCCUCUCUGUCa -3'
miRNA:   3'- uUGAGC-GCg---------UGAG-----UGCGGAGGGACAG- -5'
12460 3' -58.7 NC_003324.1 + 40990 0.68 0.378017
Target:  5'- aGGCUCGCGCGCUCA--UCUCUgaGUUg -3'
miRNA:   3'- -UUGAGCGCGUGAGUgcGGAGGgaCAG- -5'
12460 3' -58.7 NC_003324.1 + 7846 0.69 0.34414
Target:  5'- --gUUGCGa--UCGCGCCUCCCUG-Cg -3'
miRNA:   3'- uugAGCGCgugAGUGCGGAGGGACaG- -5'
12460 3' -58.7 NC_003324.1 + 33751 0.73 0.1974
Target:  5'- aAACUCGcCGuCACagCACGUCUCCCaGUCa -3'
miRNA:   3'- -UUGAGC-GC-GUGa-GUGCGGAGGGaCAG- -5'
12460 3' -58.7 NC_003324.1 + 5803 0.73 0.182259
Target:  5'- -uCUCGUGCAC-CGCGCCUgCCUGc- -3'
miRNA:   3'- uuGAGCGCGUGaGUGCGGAgGGACag -5'
12460 3' -58.7 NC_003324.1 + 44235 0.74 0.159301
Target:  5'- --aUCGCGCGCaacgcugugCACGCUUUCCUGUCc -3'
miRNA:   3'- uugAGCGCGUGa--------GUGCGGAGGGACAG- -5'
12460 3' -58.7 NC_003324.1 + 34112 1.08 0.000508
Target:  5'- gAACUCGCGCACUCACGCCUCCCUGUCg -3'
miRNA:   3'- -UUGAGCGCGUGAGUGCGGAGGGACAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.