miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12460 5' -58.2 NC_003324.1 + 34148 1.05 0.000937
Target:  5'- cAGGUCAGGGACCGGCACAAGCCGUAUc -3'
miRNA:   3'- -UCCAGUCCCUGGCCGUGUUCGGCAUA- -5'
12460 5' -58.2 NC_003324.1 + 16551 0.71 0.274722
Target:  5'- aGGGUgAGGGGCUGGCugcuCAucgucucGCCGUAg -3'
miRNA:   3'- -UCCAgUCCCUGGCCGu---GUu------CGGCAUa -5'
12460 5' -58.2 NC_003324.1 + 41187 0.71 0.261194
Target:  5'- cAGG--AGGGACC-GCAUGAGCCGUAg -3'
miRNA:   3'- -UCCagUCCCUGGcCGUGUUCGGCAUa -5'
12460 5' -58.2 NC_003324.1 + 14571 0.7 0.296058
Target:  5'- uGGGUCGcGGccuGCCGGCGCAagcGGCCGg-- -3'
miRNA:   3'- -UCCAGUcCC---UGGCCGUGU---UCGGCaua -5'
12460 5' -58.2 NC_003324.1 + 8414 0.7 0.317885
Target:  5'- cGGGUCAGGGauuuccGCCGGCugcagguGCAGGCgGa-- -3'
miRNA:   3'- -UCCAGUCCC------UGGCCG-------UGUUCGgCaua -5'
12460 5' -58.2 NC_003324.1 + 54256 0.67 0.499383
Target:  5'- cGGUugcCAuGGACCGGCAUcagcgccGAGCCGUu- -3'
miRNA:   3'- uCCA---GUcCCUGGCCGUG-------UUCGGCAua -5'
12460 5' -58.2 NC_003324.1 + 20326 0.67 0.50041
Target:  5'- cGGUCGGGGuucgccaucGCCGaCAgAAGCCGg-- -3'
miRNA:   3'- uCCAGUCCC---------UGGCcGUgUUCGGCaua -5'
12460 5' -58.2 NC_003324.1 + 46660 0.66 0.531621
Target:  5'- aAGGUCugcguGGGAuaGGCugGaaAGCCGUc- -3'
miRNA:   3'- -UCCAGu----CCCUggCCGugU--UCGGCAua -5'
12460 5' -58.2 NC_003324.1 + 37298 0.66 0.552814
Target:  5'- cGGUUgacuGGGuaAUCGGCACAgagaagcgcAGCCGUAc -3'
miRNA:   3'- uCCAGu---CCC--UGGCCGUGU---------UCGGCAUa -5'
12460 5' -58.2 NC_003324.1 + 53669 0.66 0.542184
Target:  5'- gAGuGUCaugucgcaaagGGGGACCGGCAuCAGGCgGc-- -3'
miRNA:   3'- -UC-CAG-----------UCCCUGGCCGU-GUUCGgCaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.