miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12461 3' -60.9 NC_003324.1 + 38364 0.66 0.469654
Target:  5'- cGCUgGUCGCCGUCgUgCGGgAggaagUGGUGg -3'
miRNA:   3'- -UGAgCGGCGGCAGgA-GCCgUa----GCCAC- -5'
12461 3' -60.9 NC_003324.1 + 24036 0.66 0.460066
Target:  5'- cACUCGCCaCCGUCUugaacgacuUCGGCcgC-GUGa -3'
miRNA:   3'- -UGAGCGGcGGCAGG---------AGCCGuaGcCAC- -5'
12461 3' -60.9 NC_003324.1 + 50385 0.66 0.459113
Target:  5'- -gUCGCCGuuGUCC-CGGgccgcgaCAuguUCGGUGa -3'
miRNA:   3'- ugAGCGGCggCAGGaGCC-------GU---AGCCAC- -5'
12461 3' -60.9 NC_003324.1 + 36808 0.66 0.450583
Target:  5'- cCUCGUCGCCGUa---GGCAUCGa-- -3'
miRNA:   3'- uGAGCGGCGGCAggagCCGUAGCcac -5'
12461 3' -60.9 NC_003324.1 + 21302 0.66 0.435637
Target:  5'- aACgCGCCGUCGcCUUCGGCAgcucgaaagccaggCGGUu -3'
miRNA:   3'- -UGaGCGGCGGCaGGAGCCGUa-------------GCCAc -5'
12461 3' -60.9 NC_003324.1 + 2621 0.66 0.431945
Target:  5'- uGC-CGuCUGCCGUCCgUCGccuguuCGUCGGUGg -3'
miRNA:   3'- -UGaGC-GGCGGCAGG-AGCc-----GUAGCCAC- -5'
12461 3' -60.9 NC_003324.1 + 15552 0.67 0.387399
Target:  5'- -gUCGUCGCUaUCCUCGGCcUUGGc- -3'
miRNA:   3'- ugAGCGGCGGcAGGAGCCGuAGCCac -5'
12461 3' -60.9 NC_003324.1 + 34835 0.67 0.387399
Target:  5'- aGCUCGCCGUCGUCgaacugCUCuGCGaugCGGUc -3'
miRNA:   3'- -UGAGCGGCGGCAG------GAGcCGUa--GCCAc -5'
12461 3' -60.9 NC_003324.1 + 5147 0.68 0.354009
Target:  5'- aGCUaucagGCCGCguucggGUCCUUGGCggCGGUGu -3'
miRNA:   3'- -UGAg----CGGCGg-----CAGGAGCCGuaGCCAC- -5'
12461 3' -60.9 NC_003324.1 + 25563 0.68 0.354009
Target:  5'- uCUgGCCGCCuucgccgagauuGUCCUCGGC---GGUGa -3'
miRNA:   3'- uGAgCGGCGG------------CAGGAGCCGuagCCAC- -5'
12461 3' -60.9 NC_003324.1 + 15456 0.68 0.345985
Target:  5'- uGCUCGCUGCgcucguauucagCGUCCUCGcgcGCAUCGa-- -3'
miRNA:   3'- -UGAGCGGCG------------GCAGGAGC---CGUAGCcac -5'
12461 3' -60.9 NC_003324.1 + 32089 0.68 0.338092
Target:  5'- cCUCGCUGCg--CCUCGGCucgucgcCGGUGa -3'
miRNA:   3'- uGAGCGGCGgcaGGAGCCGua-----GCCAC- -5'
12461 3' -60.9 NC_003324.1 + 51539 0.69 0.307842
Target:  5'- gGCUUggGCUGCCGUCUUgCGGCAaCGGc- -3'
miRNA:   3'- -UGAG--CGGCGGCAGGA-GCCGUaGCCac -5'
12461 3' -60.9 NC_003324.1 + 48899 0.69 0.293509
Target:  5'- cCUCGUCGCCc-CCaUUGGCcUCGGUGg -3'
miRNA:   3'- uGAGCGGCGGcaGG-AGCCGuAGCCAC- -5'
12461 3' -60.9 NC_003324.1 + 55332 0.69 0.293509
Target:  5'- uCUCGCgcggUGCCGUCCgcCGGCAcgUCGGa- -3'
miRNA:   3'- uGAGCG----GCGGCAGGa-GCCGU--AGCCac -5'
12461 3' -60.9 NC_003324.1 + 35392 0.7 0.25997
Target:  5'- uGCUCgGCCGCCGcgcgcaugguuUCCUCGcCcUCGGUGc -3'
miRNA:   3'- -UGAG-CGGCGGC-----------AGGAGCcGuAGCCAC- -5'
12461 3' -60.9 NC_003324.1 + 32474 0.71 0.223923
Target:  5'- -gUCGCCuucGCCGgcagCCUCGGCGaucaCGGUGu -3'
miRNA:   3'- ugAGCGG---CGGCa---GGAGCCGUa---GCCAC- -5'
12461 3' -60.9 NC_003324.1 + 34406 1.08 0.000413
Target:  5'- aACUCGCCGCCGUCCUCGGCAUCGGUGa -3'
miRNA:   3'- -UGAGCGGCGGCAGGAGCCGUAGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.