miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12461 5' -56.9 NC_003324.1 + 5419 0.66 0.635006
Target:  5'- gGGCGcCGUUGGUgucGAGauCGUCGGCGucgaGGAUc -3'
miRNA:   3'- -CCGU-GUAACCG---UUC--GCAGCCGC----CCUA- -5'
12461 5' -56.9 NC_003324.1 + 52203 0.66 0.631717
Target:  5'- cGGCACcgcccgauacuaccaUGGCGGGU-UCGGCGGGc- -3'
miRNA:   3'- -CCGUGua-------------ACCGUUCGcAGCCGCCCua -5'
12461 5' -56.9 NC_003324.1 + 24289 0.66 0.622949
Target:  5'- gGGCACGgcggagcUUGGCGaaGGCGUC-GCGGa-- -3'
miRNA:   3'- -CCGUGU-------AACCGU--UCGCAGcCGCCcua -5'
12461 5' -56.9 NC_003324.1 + 49550 0.66 0.59124
Target:  5'- cGGCACcUUGGCAuaguccuCGUCGGCagaGGuGAUa -3'
miRNA:   3'- -CCGUGuAACCGUuc-----GCAGCCG---CC-CUA- -5'
12461 5' -56.9 NC_003324.1 + 42917 0.66 0.59124
Target:  5'- gGGCGacCAUUGGCGGucacuGCGcCGGCGGu-- -3'
miRNA:   3'- -CCGU--GUAACCGUU-----CGCaGCCGCCcua -5'
12461 5' -56.9 NC_003324.1 + 46302 0.66 0.587973
Target:  5'- cGGCGCAUgacacaggaacagcUcGCGAGCG-CGGUGGGc- -3'
miRNA:   3'- -CCGUGUA--------------AcCGUUCGCaGCCGCCCua -5'
12461 5' -56.9 NC_003324.1 + 2540 0.66 0.586885
Target:  5'- gGGCGCuaggccaauugaaGUUGGUGgggaacaagccgccGGCGUCGGCGGc-- -3'
miRNA:   3'- -CCGUG-------------UAACCGU--------------UCGCAGCCGCCcua -5'
12461 5' -56.9 NC_003324.1 + 14602 0.67 0.569527
Target:  5'- cGGCGCA--GGCGguAGCGUggCGGCcGGAg -3'
miRNA:   3'- -CCGUGUaaCCGU--UCGCA--GCCGcCCUa -5'
12461 5' -56.9 NC_003324.1 + 40328 0.67 0.569527
Target:  5'- cGCACGcaaGGC-GGCaGUCGaGCGGGAg -3'
miRNA:   3'- cCGUGUaa-CCGuUCG-CAGC-CGCCCUa -5'
12461 5' -56.9 NC_003324.1 + 13170 0.67 0.558742
Target:  5'- aGGCuGCGUcGGC-GGCgGUCGGCGGcGGc -3'
miRNA:   3'- -CCG-UGUAaCCGuUCG-CAGCCGCC-CUa -5'
12461 5' -56.9 NC_003324.1 + 38350 0.67 0.548015
Target:  5'- gGGCACcggGGCGGcgcuggucGcCGUCGuGCGGGAg -3'
miRNA:   3'- -CCGUGuaaCCGUU--------C-GCAGC-CGCCCUa -5'
12461 5' -56.9 NC_003324.1 + 49862 0.67 0.537354
Target:  5'- aGGCGgAguacGGCAAGUGagcCGGCGGGc- -3'
miRNA:   3'- -CCGUgUaa--CCGUUCGCa--GCCGCCCua -5'
12461 5' -56.9 NC_003324.1 + 37133 0.67 0.526766
Target:  5'- cGGC-CAa-GGUuGGCGUCGGCuGGAUg -3'
miRNA:   3'- -CCGuGUaaCCGuUCGCAGCCGcCCUA- -5'
12461 5' -56.9 NC_003324.1 + 31315 0.68 0.475129
Target:  5'- cGGC-CGgcGGCGcuGGCGcUGGCGGGGg -3'
miRNA:   3'- -CCGuGUaaCCGU--UCGCaGCCGCCCUa -5'
12461 5' -56.9 NC_003324.1 + 23408 0.69 0.435703
Target:  5'- cGGCuuucuCGUUGGCc-GCGUCGGUGGc-- -3'
miRNA:   3'- -CCGu----GUAACCGuuCGCAGCCGCCcua -5'
12461 5' -56.9 NC_003324.1 + 20609 0.71 0.321869
Target:  5'- cGGCGCugaugGGCGcuuGCgGUCGGCGGGc- -3'
miRNA:   3'- -CCGUGuaa--CCGUu--CG-CAGCCGCCCua -5'
12461 5' -56.9 NC_003324.1 + 8331 0.72 0.284412
Target:  5'- cGGCGCucguuacGGUGAcCGUCGGCGGGGa -3'
miRNA:   3'- -CCGUGuaa----CCGUUcGCAGCCGCCCUa -5'
12461 5' -56.9 NC_003324.1 + 10234 0.73 0.237876
Target:  5'- aGGUcggGCAUUGucucGCGgauuuguuccGGCGUCGGCGGGGUg -3'
miRNA:   3'- -CCG---UGUAAC----CGU----------UCGCAGCCGCCCUA- -5'
12461 5' -56.9 NC_003324.1 + 18495 0.76 0.146901
Target:  5'- aGCuCGUUGGCGAGCGUCacGGCGcGGGUc -3'
miRNA:   3'- cCGuGUAACCGUUCGCAG--CCGC-CCUA- -5'
12461 5' -56.9 NC_003324.1 + 34444 1.07 0.000838
Target:  5'- cGGCACAUUGGCAAGCGUCGGCGGGAUu -3'
miRNA:   3'- -CCGUGUAACCGUUCGCAGCCGCCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.