miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12466 3' -51.6 NC_003324.1 + 38008 0.66 0.915295
Target:  5'- aGCGGUUgcgGCGcACGgggCgCGUCAAcauuccGCCGa -3'
miRNA:   3'- aCGCCAAa--UGC-UGCa--G-GUAGUU------CGGC- -5'
12466 3' -51.6 NC_003324.1 + 53440 0.66 0.908777
Target:  5'- cUGCGGUUacACGACaGaCCGuaUCAAcGCCGg -3'
miRNA:   3'- -ACGCCAAa-UGCUG-CaGGU--AGUU-CGGC- -5'
12466 3' -51.6 NC_003324.1 + 15988 0.66 0.908777
Target:  5'- aUGCGcg--GCGAUG-CCAUCAccAGCCu -3'
miRNA:   3'- -ACGCcaaaUGCUGCaGGUAGU--UCGGc -5'
12466 3' -51.6 NC_003324.1 + 18942 0.66 0.908777
Target:  5'- cUGCGGg--ACGACuUCCcaaauggcaagAUCGAGaCCGg -3'
miRNA:   3'- -ACGCCaaaUGCUGcAGG-----------UAGUUC-GGC- -5'
12466 3' -51.6 NC_003324.1 + 53715 0.66 0.901976
Target:  5'- gGCGGUagUUcuuuuggagccgGCGACGUUCGUCGcgcAGCuCGu -3'
miRNA:   3'- aCGCCA--AA------------UGCUGCAGGUAGU---UCG-GC- -5'
12466 3' -51.6 NC_003324.1 + 42041 0.66 0.887538
Target:  5'- aGUGGUgaacggACGAUGccacgugCCAUCAAGCg- -3'
miRNA:   3'- aCGCCAaa----UGCUGCa------GGUAGUUCGgc -5'
12466 3' -51.6 NC_003324.1 + 12531 0.67 0.87991
Target:  5'- gGCaGUUcgagGCGACGguUCgAUCAGGCUGg -3'
miRNA:   3'- aCGcCAAa---UGCUGC--AGgUAGUUCGGC- -5'
12466 3' -51.6 NC_003324.1 + 30453 0.67 0.876785
Target:  5'- gGCGGcauggccgaggGCGACG-CCAUCAAGgCu -3'
miRNA:   3'- aCGCCaaa--------UGCUGCaGGUAGUUCgGc -5'
12466 3' -51.6 NC_003324.1 + 36505 0.67 0.863867
Target:  5'- gGCGGUaggGCGACGgcgacagCCAUagGAGaCCGg -3'
miRNA:   3'- aCGCCAaa-UGCUGCa------GGUAg-UUC-GGC- -5'
12466 3' -51.6 NC_003324.1 + 52225 0.67 0.863867
Target:  5'- gGCGGguu-CGGCGggCUAUCAcucGGCCa -3'
miRNA:   3'- aCGCCaaauGCUGCa-GGUAGU---UCGGc -5'
12466 3' -51.6 NC_003324.1 + 38896 0.67 0.855466
Target:  5'- cGCcauGGacccgcACGGCGUCauCAUCGAGCCGa -3'
miRNA:   3'- aCG---CCaaa---UGCUGCAG--GUAGUUCGGC- -5'
12466 3' -51.6 NC_003324.1 + 43470 0.67 0.855466
Target:  5'- cUGCGGUcagauCGGCgGUUUggGUCGAGCCGc -3'
miRNA:   3'- -ACGCCAaau--GCUG-CAGG--UAGUUCGGC- -5'
12466 3' -51.6 NC_003324.1 + 47560 0.68 0.829761
Target:  5'- gGUGGaugACGAgGgccgaucgacccucgCCGUCGAGCCGg -3'
miRNA:   3'- aCGCCaaaUGCUgCa--------------GGUAGUUCGGC- -5'
12466 3' -51.6 NC_003324.1 + 37746 0.68 0.819523
Target:  5'- aUGCGGcUUGCGAUGUUCAUUGcGGaCCa -3'
miRNA:   3'- -ACGCCaAAUGCUGCAGGUAGU-UC-GGc -5'
12466 3' -51.6 NC_003324.1 + 18817 0.68 0.81
Target:  5'- cGCGGcgaagguCGGCGccagucUCCAUCAcGCCGg -3'
miRNA:   3'- aCGCCaaau---GCUGC------AGGUAGUuCGGC- -5'
12466 3' -51.6 NC_003324.1 + 7284 0.69 0.770085
Target:  5'- gUGCGGggUgucaaaGgGACG-CCAUCGAGCuCGg -3'
miRNA:   3'- -ACGCCaaA------UgCUGCaGGUAGUUCG-GC- -5'
12466 3' -51.6 NC_003324.1 + 12498 0.69 0.759708
Target:  5'- cGCGGUcugcUACG-CGUCCAacgaCGGGCUGg -3'
miRNA:   3'- aCGCCAa---AUGCuGCAGGUa---GUUCGGC- -5'
12466 3' -51.6 NC_003324.1 + 16332 0.69 0.749195
Target:  5'- aGCGGUccGCGACGgcguugCCGUCGAucgcGUCGu -3'
miRNA:   3'- aCGCCAaaUGCUGCa-----GGUAGUU----CGGC- -5'
12466 3' -51.6 NC_003324.1 + 23699 0.71 0.650467
Target:  5'- cGCGGa----GACGagCGUCAGGCCGa -3'
miRNA:   3'- aCGCCaaaugCUGCagGUAGUUCGGC- -5'
12466 3' -51.6 NC_003324.1 + 57034 0.73 0.550173
Target:  5'- gGCGGguggaucUACGACG-CUcgCAAGCCGu -3'
miRNA:   3'- aCGCCaa-----AUGCUGCaGGuaGUUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.