miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12468 3' -50.3 NC_003324.1 + 33547 0.66 0.958824
Target:  5'- ----cGUUCGgcGUCGACG-GCUCc- -3'
miRNA:   3'- guaaaCGAGCuaCAGCUGCuCGAGcc -5'
12468 3' -50.3 NC_003324.1 + 45611 0.66 0.954672
Target:  5'- ---aUGUUCGAUGUUG-CGGGcCUCa- -3'
miRNA:   3'- guaaACGAGCUACAGCuGCUC-GAGcc -5'
12468 3' -50.3 NC_003324.1 + 54030 0.66 0.935276
Target:  5'- ---gUGCUCGAaauUGUCGGCGucuuucuGCaggCGGc -3'
miRNA:   3'- guaaACGAGCU---ACAGCUGCu------CGa--GCC- -5'
12468 3' -50.3 NC_003324.1 + 54680 0.67 0.929714
Target:  5'- --cUUGCUCGA--UCGACGuAGUUCa- -3'
miRNA:   3'- guaAACGAGCUacAGCUGC-UCGAGcc -5'
12468 3' -50.3 NC_003324.1 + 1022 0.67 0.923863
Target:  5'- ----aGCUCGcUGacggCGGCGGGCUCa- -3'
miRNA:   3'- guaaaCGAGCuACa---GCUGCUCGAGcc -5'
12468 3' -50.3 NC_003324.1 + 18229 0.67 0.923863
Target:  5'- --cUUGC-CGGUGUCGGCGAaaccgGCgUCGa -3'
miRNA:   3'- guaAACGaGCUACAGCUGCU-----CG-AGCc -5'
12468 3' -50.3 NC_003324.1 + 39747 0.68 0.890309
Target:  5'- ----aGCaCGAUGUCGAgGAagagggcgcGCUCGGu -3'
miRNA:   3'- guaaaCGaGCUACAGCUgCU---------CGAGCC- -5'
12468 3' -50.3 NC_003324.1 + 20596 0.68 0.882759
Target:  5'- ----cGCUUGcgGUCGGCGGGCaCGc -3'
miRNA:   3'- guaaaCGAGCuaCAGCUGCUCGaGCc -5'
12468 3' -50.3 NC_003324.1 + 17623 0.73 0.653853
Target:  5'- ----aGCaCGAUGcCGcCGAGCUCGGg -3'
miRNA:   3'- guaaaCGaGCUACaGCuGCUCGAGCC- -5'
12468 3' -50.3 NC_003324.1 + 35462 0.73 0.653853
Target:  5'- ----cGUcggCGAUGUCGGCGAGCgUGGg -3'
miRNA:   3'- guaaaCGa--GCUACAGCUGCUCGaGCC- -5'
12468 3' -50.3 NC_003324.1 + 22795 0.73 0.620118
Target:  5'- ----aGgaCGAUGggcugaccuUCGACGAGCUCGGc -3'
miRNA:   3'- guaaaCgaGCUAC---------AGCUGCUCGAGCC- -5'
12468 3' -50.3 NC_003324.1 + 23967 0.76 0.447545
Target:  5'- ---cUGCggacgCGAUcGUCGAgGAGCUCGGu -3'
miRNA:   3'- guaaACGa----GCUA-CAGCUgCUCGAGCC- -5'
12468 3' -50.3 NC_003324.1 + 41762 1.1 0.003174
Target:  5'- cCAUUUGCUCGAUGUCGACGAGCUCGGc -3'
miRNA:   3'- -GUAAACGAGCUACAGCUGCUCGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.