Results 1 - 20 of 20 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 13169 | 0.66 | 0.543155 |
Target: 5'- --gGCUGCgucgGCGGcGGUCGGCGGCGGc -3' miRNA: 3'- uuaCGGCGg---CGCCcCUAGUCGUUGUC- -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 18839 | 0.66 | 0.522018 |
Target: 5'- --aGCUGCuCGUGGGcuccggcGUCAGCAACGa -3' miRNA: 3'- uuaCGGCG-GCGCCCc------UAGUCGUUGUc -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 42638 | 0.66 | 0.490938 |
Target: 5'- --cGgCGCCGgGcGcGGAUCuGCAACAGc -3' miRNA: 3'- uuaCgGCGGCgC-C-CCUAGuCGUUGUC- -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 30431 | 0.66 | 0.490938 |
Target: 5'- --aGCUGCuCGCGcGGGAUCugcGCAAUg- -3' miRNA: 3'- uuaCGGCG-GCGC-CCCUAGu--CGUUGuc -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 8973 | 0.67 | 0.480769 |
Target: 5'- -cUGCCGCCcgcuGUGGGGAauUUGGCcGCAu -3' miRNA: 3'- uuACGGCGG----CGCCCCU--AGUCGuUGUc -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 44010 | 0.67 | 0.470702 |
Target: 5'- --gGCUGCCGCcGGGAUCAuGCcgAGCGc -3' miRNA: 3'- uuaCGGCGGCGcCCCUAGU-CG--UUGUc -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 56676 | 0.67 | 0.431562 |
Target: 5'- aAGUGCCGCCGUcaauucGUCAGCGAUAGc -3' miRNA: 3'- -UUACGGCGGCGcccc--UAGUCGUUGUC- -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 56298 | 0.68 | 0.422077 |
Target: 5'- gGAUGUCGCCGCc--GAUCgAGCGAUAGg -3' miRNA: 3'- -UUACGGCGGCGcccCUAG-UCGUUGUC- -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 8203 | 0.68 | 0.412718 |
Target: 5'- --aGCUGCCcgGCGGGuGAguuUCAGC-ACAGg -3' miRNA: 3'- uuaCGGCGG--CGCCC-CU---AGUCGuUGUC- -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 35015 | 0.68 | 0.412718 |
Target: 5'- -cUGCCGCagcagcagcaGCGGcGGcggCAGCAGCGGc -3' miRNA: 3'- uuACGGCGg---------CGCC-CCua-GUCGUUGUC- -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 24578 | 0.68 | 0.403489 |
Target: 5'- ---aCCGCUGCGGGcGAcCAGC-GCAGg -3' miRNA: 3'- uuacGGCGGCGCCC-CUaGUCGuUGUC- -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 43248 | 0.69 | 0.326556 |
Target: 5'- --gGCCGCCuGCaGGGucgccuggCAGCGGCAGu -3' miRNA: 3'- uuaCGGCGG-CGcCCCua------GUCGUUGUC- -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 45311 | 0.7 | 0.296028 |
Target: 5'- --aGCCGgCGCuGGGAUCgAGCAGCu- -3' miRNA: 3'- uuaCGGCgGCGcCCCUAG-UCGUUGuc -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 19848 | 0.71 | 0.274621 |
Target: 5'- aAAUGCCGCCG-GGGGAc--GCgAACAGa -3' miRNA: 3'- -UUACGGCGGCgCCCCUaguCG-UUGUC- -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 49116 | 0.71 | 0.26105 |
Target: 5'- --cGCCGCCGCGGGaGAggugagaAGCAugGc -3' miRNA: 3'- uuaCGGCGGCGCCC-CUag-----UCGUugUc -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 32512 | 0.72 | 0.229512 |
Target: 5'- cGAUGUCGCuccaauCGCGGGGcgaGGCAGCGGg -3' miRNA: 3'- -UUACGGCG------GCGCCCCuagUCGUUGUC- -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 22220 | 0.76 | 0.126413 |
Target: 5'- -uUGCCGCCGCGcaccuucGGGAgCGGCAACGu -3' miRNA: 3'- uuACGGCGGCGC-------CCCUaGUCGUUGUc -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 22699 | 0.76 | 0.116604 |
Target: 5'- --aGCgCGUCGCGGGGcUCGGCAACGc -3' miRNA: 3'- uuaCG-GCGGCGCCCCuAGUCGUUGUc -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 44807 | 0.78 | 0.093111 |
Target: 5'- gGAUGCUGCUGCGGGGAgaaGGgGGCGGc -3' miRNA: 3'- -UUACGGCGGCGCCCCUag-UCgUUGUC- -5' |
|||||||
12469 | 3' | -58.3 | NC_003324.1 | + | 42133 | 1.06 | 0.000661 |
Target: 5'- cAAUGCCGCCGCGGGGAUCAGCAACAGa -3' miRNA: 3'- -UUACGGCGGCGCCCCUAGUCGUUGUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home