miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12469 3' -58.3 NC_003324.1 + 13169 0.66 0.543155
Target:  5'- --gGCUGCgucgGCGGcGGUCGGCGGCGGc -3'
miRNA:   3'- uuaCGGCGg---CGCCcCUAGUCGUUGUC- -5'
12469 3' -58.3 NC_003324.1 + 18839 0.66 0.522018
Target:  5'- --aGCUGCuCGUGGGcuccggcGUCAGCAACGa -3'
miRNA:   3'- uuaCGGCG-GCGCCCc------UAGUCGUUGUc -5'
12469 3' -58.3 NC_003324.1 + 30431 0.66 0.490938
Target:  5'- --aGCUGCuCGCGcGGGAUCugcGCAAUg- -3'
miRNA:   3'- uuaCGGCG-GCGC-CCCUAGu--CGUUGuc -5'
12469 3' -58.3 NC_003324.1 + 42638 0.66 0.490938
Target:  5'- --cGgCGCCGgGcGcGGAUCuGCAACAGc -3'
miRNA:   3'- uuaCgGCGGCgC-C-CCUAGuCGUUGUC- -5'
12469 3' -58.3 NC_003324.1 + 8973 0.67 0.480769
Target:  5'- -cUGCCGCCcgcuGUGGGGAauUUGGCcGCAu -3'
miRNA:   3'- uuACGGCGG----CGCCCCU--AGUCGuUGUc -5'
12469 3' -58.3 NC_003324.1 + 44010 0.67 0.470702
Target:  5'- --gGCUGCCGCcGGGAUCAuGCcgAGCGc -3'
miRNA:   3'- uuaCGGCGGCGcCCCUAGU-CG--UUGUc -5'
12469 3' -58.3 NC_003324.1 + 56676 0.67 0.431562
Target:  5'- aAGUGCCGCCGUcaauucGUCAGCGAUAGc -3'
miRNA:   3'- -UUACGGCGGCGcccc--UAGUCGUUGUC- -5'
12469 3' -58.3 NC_003324.1 + 56298 0.68 0.422077
Target:  5'- gGAUGUCGCCGCc--GAUCgAGCGAUAGg -3'
miRNA:   3'- -UUACGGCGGCGcccCUAG-UCGUUGUC- -5'
12469 3' -58.3 NC_003324.1 + 8203 0.68 0.412718
Target:  5'- --aGCUGCCcgGCGGGuGAguuUCAGC-ACAGg -3'
miRNA:   3'- uuaCGGCGG--CGCCC-CU---AGUCGuUGUC- -5'
12469 3' -58.3 NC_003324.1 + 35015 0.68 0.412718
Target:  5'- -cUGCCGCagcagcagcaGCGGcGGcggCAGCAGCGGc -3'
miRNA:   3'- uuACGGCGg---------CGCC-CCua-GUCGUUGUC- -5'
12469 3' -58.3 NC_003324.1 + 24578 0.68 0.403489
Target:  5'- ---aCCGCUGCGGGcGAcCAGC-GCAGg -3'
miRNA:   3'- uuacGGCGGCGCCC-CUaGUCGuUGUC- -5'
12469 3' -58.3 NC_003324.1 + 43248 0.69 0.326556
Target:  5'- --gGCCGCCuGCaGGGucgccuggCAGCGGCAGu -3'
miRNA:   3'- uuaCGGCGG-CGcCCCua------GUCGUUGUC- -5'
12469 3' -58.3 NC_003324.1 + 45311 0.7 0.296028
Target:  5'- --aGCCGgCGCuGGGAUCgAGCAGCu- -3'
miRNA:   3'- uuaCGGCgGCGcCCCUAG-UCGUUGuc -5'
12469 3' -58.3 NC_003324.1 + 19848 0.71 0.274621
Target:  5'- aAAUGCCGCCG-GGGGAc--GCgAACAGa -3'
miRNA:   3'- -UUACGGCGGCgCCCCUaguCG-UUGUC- -5'
12469 3' -58.3 NC_003324.1 + 49116 0.71 0.26105
Target:  5'- --cGCCGCCGCGGGaGAggugagaAGCAugGc -3'
miRNA:   3'- uuaCGGCGGCGCCC-CUag-----UCGUugUc -5'
12469 3' -58.3 NC_003324.1 + 32512 0.72 0.229512
Target:  5'- cGAUGUCGCuccaauCGCGGGGcgaGGCAGCGGg -3'
miRNA:   3'- -UUACGGCG------GCGCCCCuagUCGUUGUC- -5'
12469 3' -58.3 NC_003324.1 + 22220 0.76 0.126413
Target:  5'- -uUGCCGCCGCGcaccuucGGGAgCGGCAACGu -3'
miRNA:   3'- uuACGGCGGCGC-------CCCUaGUCGUUGUc -5'
12469 3' -58.3 NC_003324.1 + 22699 0.76 0.116604
Target:  5'- --aGCgCGUCGCGGGGcUCGGCAACGc -3'
miRNA:   3'- uuaCG-GCGGCGCCCCuAGUCGUUGUc -5'
12469 3' -58.3 NC_003324.1 + 44807 0.78 0.093111
Target:  5'- gGAUGCUGCUGCGGGGAgaaGGgGGCGGc -3'
miRNA:   3'- -UUACGGCGGCGCCCCUag-UCgUUGUC- -5'
12469 3' -58.3 NC_003324.1 + 42133 1.06 0.000661
Target:  5'- cAAUGCCGCCGCGGGGAUCAGCAACAGa -3'
miRNA:   3'- -UUACGGCGGCGCCCCUAGUCGUUGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.