miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12470 5' -54.2 NC_003324.1 + 55029 0.7 0.548072
Target:  5'- cGCGCCGGgcaggcaaGGCGGACggcUGGGcugccGCGACg -3'
miRNA:   3'- -CGCGGCCa-------CUGUCUGa--AUCU-----CGCUGa -5'
12470 5' -54.2 NC_003324.1 + 51532 0.67 0.712407
Target:  5'- -gGCCGGUGGCuuGGGCUgccgucuuGCGGCa -3'
miRNA:   3'- cgCGGCCACUG--UCUGAaucu----CGCUGa -5'
12470 5' -54.2 NC_003324.1 + 42323 1.09 0.001363
Target:  5'- gGCGCCGGUGACAGACUUAGAGCGACUu -3'
miRNA:   3'- -CGCGGCCACUGUCUGAAUCUCGCUGA- -5'
12470 5' -54.2 NC_003324.1 + 41812 0.66 0.794981
Target:  5'- gGUGCC-GUGGCGuGAUcgcaUGGAGCGACc -3'
miRNA:   3'- -CGCGGcCACUGU-CUGa---AUCUCGCUGa -5'
12470 5' -54.2 NC_003324.1 + 40060 0.67 0.701606
Target:  5'- aCGCuCGGcgcGACGGACUUGGAGauugcgcaGGCUu -3'
miRNA:   3'- cGCG-GCCa--CUGUCUGAAUCUCg-------CUGA- -5'
12470 5' -54.2 NC_003324.1 + 39839 0.66 0.754702
Target:  5'- -aGCCGGUGGCAcGCUUGuAGaGGCUg -3'
miRNA:   3'- cgCGGCCACUGUcUGAAUcUCgCUGA- -5'
12470 5' -54.2 NC_003324.1 + 35228 0.66 0.804651
Target:  5'- gGCGCCgaaGGUGACgaAGGCgcugAGgucaacGGCGACg -3'
miRNA:   3'- -CGCGG---CCACUG--UCUGaa--UC------UCGCUGa -5'
12470 5' -54.2 NC_003324.1 + 32747 0.66 0.794981
Target:  5'- cCGCCgaccgguuuGGUGGCGGGCUUu--GUGACg -3'
miRNA:   3'- cGCGG---------CCACUGUCUGAAucuCGCUGa -5'
12470 5' -54.2 NC_003324.1 + 31100 0.67 0.73376
Target:  5'- cGCGCCGGUcgcuaccaagcGAUcGACg-AGAGCGaACUg -3'
miRNA:   3'- -CGCGGCCA-----------CUGuCUGaaUCUCGC-UGA- -5'
12470 5' -54.2 NC_003324.1 + 27180 0.66 0.754702
Target:  5'- cGCGCUGGUGugcugcgcCAGAUgcagGGAGCcGCa -3'
miRNA:   3'- -CGCGGCCACu-------GUCUGaa--UCUCGcUGa -5'
12470 5' -54.2 NC_003324.1 + 23996 0.66 0.764989
Target:  5'- cGCGCUGGUagGGCGGcggUAGGGCuGCUg -3'
miRNA:   3'- -CGCGGCCA--CUGUCugaAUCUCGcUGA- -5'
12470 5' -54.2 NC_003324.1 + 14809 0.66 0.804651
Target:  5'- cGCgGCCGGcaucGGCAG-CUUccuGGGCGGCa -3'
miRNA:   3'- -CG-CGGCCa---CUGUCuGAAu--CUCGCUGa -5'
12470 5' -54.2 NC_003324.1 + 12522 0.69 0.591642
Target:  5'- cGgGCUGGUGGCAGuucgAG-GCGACg -3'
miRNA:   3'- -CgCGGCCACUGUCugaaUCuCGCUGa -5'
12470 5' -54.2 NC_003324.1 + 10809 0.69 0.602641
Target:  5'- gGCGCUGGUGgu-GGCUgcacGAGUGACg -3'
miRNA:   3'- -CGCGGCCACuguCUGAau--CUCGCUGa -5'
12470 5' -54.2 NC_003324.1 + 7775 0.73 0.406436
Target:  5'- cGCGCCGGUGuuuccggggucgGCGGugUgc-AGCGACa -3'
miRNA:   3'- -CGCGGCCAC------------UGUCugAaucUCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.