miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12471 3' -52.6 NC_003324.1 + 53722 0.66 0.868703
Target:  5'- gCCgCACGGCGGuaguucuuUUGGaGcCGGCGACGu -3'
miRNA:   3'- -GG-GUGCCGUUu-------AACCcCaGUCGUUGC- -5'
12471 3' -52.6 NC_003324.1 + 48116 0.66 0.852071
Target:  5'- uCCCACGuGUAGGgc-GGGUUGGUGAUGa -3'
miRNA:   3'- -GGGUGC-CGUUUaacCCCAGUCGUUGC- -5'
12471 3' -52.6 NC_003324.1 + 45670 0.74 0.434126
Target:  5'- cCCCugGGCAauaGAUgcaGGGGcUCGGCGagGCGu -3'
miRNA:   3'- -GGGugCCGU---UUAa--CCCC-AGUCGU--UGC- -5'
12471 3' -52.6 NC_003324.1 + 42987 0.71 0.614251
Target:  5'- aCCCGC--CAAAUUcacGcGGGUCGGCAACGg -3'
miRNA:   3'- -GGGUGccGUUUAA---C-CCCAGUCGUUGC- -5'
12471 3' -52.6 NC_003324.1 + 42513 1.12 0.001258
Target:  5'- cCCCACGGCAAAUUGGGGUCAGCAACGg -3'
miRNA:   3'- -GGGUGCCGUUUAACCCCAGUCGUUGC- -5'
12471 3' -52.6 NC_003324.1 + 42253 0.72 0.530836
Target:  5'- gCUCACGGUucucGUUGagaccuacagggcgcGGGUCGGCAACGc -3'
miRNA:   3'- -GGGUGCCGuu--UAAC---------------CCCAGUCGUUGC- -5'
12471 3' -52.6 NC_003324.1 + 35470 0.66 0.852071
Target:  5'- aUguCGGCGAGcgUGGGGaCGGCGAUc -3'
miRNA:   3'- gGguGCCGUUUa-ACCCCaGUCGUUGc -5'
12471 3' -52.6 NC_003324.1 + 34439 0.66 0.876646
Target:  5'- gCCgACGGCAcAUUGGcaagcGUCGGCGGg- -3'
miRNA:   3'- -GGgUGCCGUuUAACCc----CAGUCGUUgc -5'
12471 3' -52.6 NC_003324.1 + 30129 0.69 0.691919
Target:  5'- aCCgGCGGCGugaUGGGcGgCGGCAugGg -3'
miRNA:   3'- -GGgUGCCGUuuaACCC-CaGUCGUugC- -5'
12471 3' -52.6 NC_003324.1 + 23542 0.66 0.876646
Target:  5'- cCCCACaGCGuggcgGcGGGcgcgcUCGGCGACGg -3'
miRNA:   3'- -GGGUGcCGUuuaa-C-CCC-----AGUCGUUGC- -5'
12471 3' -52.6 NC_003324.1 + 23172 0.68 0.786925
Target:  5'- gCCCACGGUAu-----GGUCGGCGagcGCGg -3'
miRNA:   3'- -GGGUGCCGUuuaaccCCAGUCGU---UGC- -5'
12471 3' -52.6 NC_003324.1 + 14101 0.66 0.868703
Target:  5'- aCCCAUGGUGucaccucuuGAUUGaGGUCAcacucaugcGCGACGg -3'
miRNA:   3'- -GGGUGCCGU---------UUAACcCCAGU---------CGUUGC- -5'
12471 3' -52.6 NC_003324.1 + 6528 0.66 0.868703
Target:  5'- gCCACGGCA-----GGGUCuGCGAg- -3'
miRNA:   3'- gGGUGCCGUuuaacCCCAGuCGUUgc -5'
12471 3' -52.6 NC_003324.1 + 5636 0.75 0.369132
Target:  5'- gCCCGCGGCGAagGUUGcGG-CGGCAACc -3'
miRNA:   3'- -GGGUGCCGUU--UAACcCCaGUCGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.