miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12472 3' -57.4 NC_003324.1 + 41555 0.66 0.556798
Target:  5'- aCGACAGCGgcgcGGGCCuguuccUCGCagGuGGCCGu -3'
miRNA:   3'- -GUUGUCGU----UCCGGua----AGCGg-C-CCGGU- -5'
12472 3' -57.4 NC_003324.1 + 32112 0.66 0.586027
Target:  5'- --cCGGUGAGGCCGagUGCCuuggucuccgccucGGGCCGg -3'
miRNA:   3'- guuGUCGUUCCGGUaaGCGG--------------CCCGGU- -5'
12472 3' -57.4 NC_003324.1 + 55035 0.66 0.600209
Target:  5'- gGGCAgGCAAGGCgGacgGCUGGGCUg -3'
miRNA:   3'- gUUGU-CGUUCCGgUaagCGGCCCGGu -5'
12472 3' -57.4 NC_003324.1 + 4693 0.66 0.600209
Target:  5'- uCAGCGGCAucauguuGGCguUcuUCGgaucCCGGGCCGa -3'
miRNA:   3'- -GUUGUCGUu------CCGguA--AGC----GGCCCGGU- -5'
12472 3' -57.4 NC_003324.1 + 31322 0.66 0.589294
Target:  5'- -cGCAGUgcGGCCGgcggCGCUGGcGCUg -3'
miRNA:   3'- guUGUCGuuCCGGUaa--GCGGCC-CGGu -5'
12472 3' -57.4 NC_003324.1 + 3162 0.66 0.589294
Target:  5'- gAAUGGCAAGaGCgGgagCGCCGugcGGCCAu -3'
miRNA:   3'- gUUGUCGUUC-CGgUaa-GCGGC---CCGGU- -5'
12472 3' -57.4 NC_003324.1 + 14513 0.66 0.546075
Target:  5'- --cCGGCAuGGGCCcagaGCCGGGCg- -3'
miRNA:   3'- guuGUCGU-UCCGGuaagCGGCCCGgu -5'
12472 3' -57.4 NC_003324.1 + 3321 0.67 0.535419
Target:  5'- gGAUuGCAGGGCUuagucgCGCUGGGCg- -3'
miRNA:   3'- gUUGuCGUUCCGGuaa---GCGGCCCGgu -5'
12472 3' -57.4 NC_003324.1 + 11643 0.67 0.524837
Target:  5'- gAGCAGCAucGGCUGcUCGCCcgcaaaGGCCGa -3'
miRNA:   3'- gUUGUCGUu-CCGGUaAGCGGc-----CCGGU- -5'
12472 3' -57.4 NC_003324.1 + 17256 0.67 0.493597
Target:  5'- cCGACAGaCGcgccAGcGCCucgucaaUCGCUGGGCCAu -3'
miRNA:   3'- -GUUGUC-GU----UC-CGGua-----AGCGGCCCGGU- -5'
12472 3' -57.4 NC_003324.1 + 32454 0.67 0.523783
Target:  5'- gCAACGGCA--GCCAUgcccucgucgccuUCGCCGGcaGCCu -3'
miRNA:   3'- -GUUGUCGUucCGGUA-------------AGCGGCC--CGGu -5'
12472 3' -57.4 NC_003324.1 + 30665 0.67 0.483373
Target:  5'- aGAUAGCugcgcggaucGcGCCA--CGCCGGGCCAa -3'
miRNA:   3'- gUUGUCGuu--------C-CGGUaaGCGGCCCGGU- -5'
12472 3' -57.4 NC_003324.1 + 41128 0.67 0.483373
Target:  5'- -cGCuGCAAGGCUA-UCGCCGGcUCAc -3'
miRNA:   3'- guUGuCGUUCCGGUaAGCGGCCcGGU- -5'
12472 3' -57.4 NC_003324.1 + 6264 0.67 0.518526
Target:  5'- -cGCAGCAAGGgCugccucucgcaugUCGUCGGGCa- -3'
miRNA:   3'- guUGUCGUUCCgGua-----------AGCGGCCCGgu -5'
12472 3' -57.4 NC_003324.1 + 35038 0.67 0.483373
Target:  5'- gCGGCAGCAGcGGCCugaucgUCGUCGcuGCCGg -3'
miRNA:   3'- -GUUGUCGUU-CCGGua----AGCGGCc-CGGU- -5'
12472 3' -57.4 NC_003324.1 + 9631 0.68 0.473251
Target:  5'- uGugAGCuGGGCCAacacCGCCGGcaacGCCAa -3'
miRNA:   3'- gUugUCGuUCCGGUaa--GCGGCC----CGGU- -5'
12472 3' -57.4 NC_003324.1 + 54405 0.68 0.432924
Target:  5'- gAACGGCAacuccccGGGaCCGc-UGCCGGGCCu -3'
miRNA:   3'- gUUGUCGU-------UCC-GGUaaGCGGCCCGGu -5'
12472 3' -57.4 NC_003324.1 + 614 0.68 0.473251
Target:  5'- gGACAuCAAGGCCuggcaGCUGGGCUu -3'
miRNA:   3'- gUUGUcGUUCCGGuaag-CGGCCCGGu -5'
12472 3' -57.4 NC_003324.1 + 36170 0.68 0.424341
Target:  5'- uCAGgAGCAGGGCuCAcUCgccacaGCCGGGCUc -3'
miRNA:   3'- -GUUgUCGUUCCG-GUaAG------CGGCCCGGu -5'
12472 3' -57.4 NC_003324.1 + 51719 0.69 0.37858
Target:  5'- --uCAGCGAGGCCGacgcaaUCGCCgagGGcGCCAa -3'
miRNA:   3'- guuGUCGUUCCGGUa-----AGCGG---CC-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.