Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12472 | 3' | -57.4 | NC_003324.1 | + | 3162 | 0.66 | 0.589294 |
Target: 5'- gAAUGGCAAGaGCgGgagCGCCGugcGGCCAu -3' miRNA: 3'- gUUGUCGUUC-CGgUaa-GCGGC---CCGGU- -5' |
|||||||
12472 | 3' | -57.4 | NC_003324.1 | + | 31322 | 0.66 | 0.589294 |
Target: 5'- -cGCAGUgcGGCCGgcggCGCUGGcGCUg -3' miRNA: 3'- guUGUCGuuCCGGUaa--GCGGCC-CGGu -5' |
|||||||
12472 | 3' | -57.4 | NC_003324.1 | + | 4693 | 0.66 | 0.600209 |
Target: 5'- uCAGCGGCAucauguuGGCguUcuUCGgaucCCGGGCCGa -3' miRNA: 3'- -GUUGUCGUu------CCGguA--AGC----GGCCCGGU- -5' |
|||||||
12472 | 3' | -57.4 | NC_003324.1 | + | 55035 | 0.66 | 0.600209 |
Target: 5'- gGGCAgGCAAGGCgGacgGCUGGGCUg -3' miRNA: 3'- gUUGU-CGUUCCGgUaagCGGCCCGGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home