miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12473 3' -53.6 NC_003324.1 + 42883 1.14 0.000946
Target:  5'- cGCGAGGAUCUGCGACCGAGAACGACCc -3'
miRNA:   3'- -CGCUCCUAGACGCUGGCUCUUGCUGG- -5'
12473 3' -53.6 NC_003324.1 + 52772 0.78 0.227279
Target:  5'- cGCGAGGAUC-GCG-CCG-GAuCGACCa -3'
miRNA:   3'- -CGCUCCUAGaCGCuGGCuCUuGCUGG- -5'
12473 3' -53.6 NC_003324.1 + 14138 0.77 0.265142
Target:  5'- cGCGAGGcGUUUGCGGucuCCGAGaAGCGACa -3'
miRNA:   3'- -CGCUCC-UAGACGCU---GGCUC-UUGCUGg -5'
12473 3' -53.6 NC_003324.1 + 20925 0.76 0.331273
Target:  5'- uCGAGGA--UGCGGCCGAcAugGACCc -3'
miRNA:   3'- cGCUCCUagACGCUGGCUcUugCUGG- -5'
12473 3' -53.6 NC_003324.1 + 49343 0.75 0.347523
Target:  5'- gGCGAGGAUCUG-GACaCGAaGACgGGCCc -3'
miRNA:   3'- -CGCUCCUAGACgCUG-GCUcUUG-CUGG- -5'
12473 3' -53.6 NC_003324.1 + 21373 0.74 0.399612
Target:  5'- gGCGAGGcggCgaacGCGGCCGAGAugaaaGCGGCa -3'
miRNA:   3'- -CGCUCCua-Ga---CGCUGGCUCU-----UGCUGg -5'
12473 3' -53.6 NC_003324.1 + 47157 0.74 0.408766
Target:  5'- cGUGucGGGGUCUacuugGCGAUgGAGAugGACCc -3'
miRNA:   3'- -CGC--UCCUAGA-----CGCUGgCUCUugCUGG- -5'
12473 3' -53.6 NC_003324.1 + 40004 0.73 0.476313
Target:  5'- gGCGAGGGUguugGCGAUCGuGAuguuGCGAUCa -3'
miRNA:   3'- -CGCUCCUAga--CGCUGGCuCU----UGCUGG- -5'
12473 3' -53.6 NC_003324.1 + 30458 0.72 0.49662
Target:  5'- uCGAGGG-CgGCauGGCCGAGGGCGACg -3'
miRNA:   3'- cGCUCCUaGaCG--CUGGCUCUUGCUGg -5'
12473 3' -53.6 NC_003324.1 + 31761 0.72 0.538331
Target:  5'- aCGGGGA--UGCGGCCGAucucggaugGAACGGCg -3'
miRNA:   3'- cGCUCCUagACGCUGGCU---------CUUGCUGg -5'
12473 3' -53.6 NC_003324.1 + 42763 0.71 0.548953
Target:  5'- uGCGcGGAUCgGCaACgGAGAACGugCc -3'
miRNA:   3'- -CGCuCCUAGaCGcUGgCUCUUGCugG- -5'
12473 3' -53.6 NC_003324.1 + 21733 0.71 0.570383
Target:  5'- gGCGAaGAUCgucauaGACCGAGAACGGgCu -3'
miRNA:   3'- -CGCUcCUAGacg---CUGGCUCUUGCUgG- -5'
12473 3' -53.6 NC_003324.1 + 1519 0.71 0.592011
Target:  5'- aGCGAGGAUCcgGCGGCaGuGGugcGCGGCg -3'
miRNA:   3'- -CGCUCCUAGa-CGCUGgCuCU---UGCUGg -5'
12473 3' -53.6 NC_003324.1 + 25007 0.7 0.602879
Target:  5'- uCGAGacaCUGCGACCGGGcGGCGugCu -3'
miRNA:   3'- cGCUCcuaGACGCUGGCUC-UUGCugG- -5'
12473 3' -53.6 NC_003324.1 + 44037 0.7 0.602879
Target:  5'- uGCGAGGuag-GUG-UCGAGGAUGGCCu -3'
miRNA:   3'- -CGCUCCuagaCGCuGGCUCUUGCUGG- -5'
12473 3' -53.6 NC_003324.1 + 45823 0.7 0.613771
Target:  5'- gGUGAGGggCUGCGGC-GAGAACa--- -3'
miRNA:   3'- -CGCUCCuaGACGCUGgCUCUUGcugg -5'
12473 3' -53.6 NC_003324.1 + 53256 0.7 0.62468
Target:  5'- cCGAGGAcCUGCGAaCGAagagGAAUGAUCg -3'
miRNA:   3'- cGCUCCUaGACGCUgGCU----CUUGCUGG- -5'
12473 3' -53.6 NC_003324.1 + 35479 0.7 0.646506
Target:  5'- gGCGAGGAaaccaugCgcggGCGGCCGAGca-GGCUg -3'
miRNA:   3'- -CGCUCCUa------Ga---CGCUGGCUCuugCUGG- -5'
12473 3' -53.6 NC_003324.1 + 30158 0.7 0.646506
Target:  5'- uCGAGGAagccgCaGCGGCCGGuGucGCGACCg -3'
miRNA:   3'- cGCUCCUa----GaCGCUGGCU-Cu-UGCUGG- -5'
12473 3' -53.6 NC_003324.1 + 20494 0.69 0.657405
Target:  5'- aGCG-GGAUgUUGCGAUugagCGAGGGCGugCc -3'
miRNA:   3'- -CGCuCCUA-GACGCUG----GCUCUUGCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.