miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12474 3' -51.6 NC_003324.1 + 43047 1.16 0.001051
Target:  5'- cGGUAACGGUUCGCGAGGUGUCAUCCCa -3'
miRNA:   3'- -CCAUUGCCAAGCGCUCCACAGUAGGG- -5'
12474 3' -51.6 NC_003324.1 + 17806 0.7 0.730169
Target:  5'- uGGUAgcgugccucACGGcgCGCauucGGGGUGUCG-CCCu -3'
miRNA:   3'- -CCAU---------UGCCaaGCG----CUCCACAGUaGGG- -5'
12474 3' -51.6 NC_003324.1 + 2859 0.66 0.921032
Target:  5'- --cAACGGccgagaggUGCGAGGUGgucacgCAUCCg -3'
miRNA:   3'- ccaUUGCCaa------GCGCUCCACa-----GUAGGg -5'
12474 3' -51.6 NC_003324.1 + 28591 0.66 0.921032
Target:  5'- -uUGGCGGUUCGCGGcuuccgcccGcUGUCG-CCCu -3'
miRNA:   3'- ccAUUGCCAAGCGCU---------CcACAGUaGGG- -5'
12474 3' -51.6 NC_003324.1 + 40604 0.66 0.921032
Target:  5'- uGGUc-CGGUUCGCuGGG-GcCAUCCg -3'
miRNA:   3'- -CCAuuGCCAAGCGcUCCaCaGUAGGg -5'
12474 3' -51.6 NC_003324.1 + 46736 0.66 0.932532
Target:  5'- aGGgagagcACGGggCGcCGAGGUGUgc-CCCg -3'
miRNA:   3'- -CCau----UGCCaaGC-GCUCCACAguaGGG- -5'
12474 3' -51.6 NC_003324.1 + 56742 0.66 0.921032
Target:  5'- aGGgAACGuGacCGUGAGGUGagGUCUCu -3'
miRNA:   3'- -CCaUUGC-CaaGCGCUCCACagUAGGG- -5'
12474 3' -51.6 NC_003324.1 + 22466 0.67 0.901696
Target:  5'- uGGUGACGGaUUGgGAGcUGUCG-CCg -3'
miRNA:   3'- -CCAUUGCCaAGCgCUCcACAGUaGGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.