miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12474 5' -54.5 NC_003324.1 + 27753 0.66 0.798066
Target:  5'- aGGGcucUGUCGUCUUGCCcgaacCCaGCCAc -3'
miRNA:   3'- gCUCuu-ACAGCAGAGCGGua---GG-CGGU- -5'
12474 5' -54.5 NC_003324.1 + 43703 0.66 0.788335
Target:  5'- --cGAAUGUCGUCcgguacCGCCugCUGCCAa -3'
miRNA:   3'- gcuCUUACAGCAGa-----GCGGuaGGCGGU- -5'
12474 5' -54.5 NC_003324.1 + 2626 0.66 0.778441
Target:  5'- -cGGcGUGcCGUCU-GCCGUCCGUCGc -3'
miRNA:   3'- gcUCuUACaGCAGAgCGGUAGGCGGU- -5'
12474 5' -54.5 NC_003324.1 + 4251 0.66 0.777443
Target:  5'- aCGAGGugaagGUCGaUCagaugCGCCAcggcguuUCCGCCGg -3'
miRNA:   3'- -GCUCUua---CAGC-AGa----GCGGU-------AGGCGGU- -5'
12474 5' -54.5 NC_003324.1 + 47645 0.66 0.768397
Target:  5'- gCGAGggUcGaUCGgccCUCGUCAUCCaCCAu -3'
miRNA:   3'- -GCUCuuA-C-AGCa--GAGCGGUAGGcGGU- -5'
12474 5' -54.5 NC_003324.1 + 57295 0.66 0.768397
Target:  5'- cCGGucGUGcCGccCUCGCC-UCCGCCGa -3'
miRNA:   3'- -GCUcuUACaGCa-GAGCGGuAGGCGGU- -5'
12474 5' -54.5 NC_003324.1 + 44050 0.66 0.758212
Target:  5'- uCGAGGAUGgCcUCUUGCucCAUCCGCUc -3'
miRNA:   3'- -GCUCUUACaGcAGAGCG--GUAGGCGGu -5'
12474 5' -54.5 NC_003324.1 + 26988 0.66 0.7479
Target:  5'- uGAGggUGUUG-C-CGCCGgucUCUGCCc -3'
miRNA:   3'- gCUCuuACAGCaGaGCGGU---AGGCGGu -5'
12474 5' -54.5 NC_003324.1 + 20317 0.67 0.73747
Target:  5'- aCGAGcuuccgGUCGgggUUCGCCAU-CGCCGa -3'
miRNA:   3'- -GCUCuua---CAGCa--GAGCGGUAgGCGGU- -5'
12474 5' -54.5 NC_003324.1 + 22137 0.67 0.716305
Target:  5'- uGAGAuUGcCG--UCGUCGUCCGCCu -3'
miRNA:   3'- gCUCUuACaGCagAGCGGUAGGCGGu -5'
12474 5' -54.5 NC_003324.1 + 23642 0.69 0.574518
Target:  5'- uGuGGAUGUacCGUCgccgagcgCGCCcgCCGCCAc -3'
miRNA:   3'- gCuCUUACA--GCAGa-------GCGGuaGGCGGU- -5'
12474 5' -54.5 NC_003324.1 + 43085 1.09 0.00131
Target:  5'- cCGAGAAUGUCGUCUCGCCAUCCGCCAg -3'
miRNA:   3'- -GCUCUUACAGCAGAGCGGUAGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.