miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12476 3' -49.8 NC_003324.1 + 45398 1.12 0.002139
Target:  5'- aUGAGAAUGGAGAAAUGCUGCACCGACg -3'
miRNA:   3'- -ACUCUUACCUCUUUACGACGUGGCUG- -5'
12476 3' -49.8 NC_003324.1 + 35477 0.7 0.782375
Target:  5'- cGAGcGUGGGGAcggcGAUcGCcGUACCGGCu -3'
miRNA:   3'- aCUCuUACCUCU----UUA-CGaCGUGGCUG- -5'
12476 3' -49.8 NC_003324.1 + 19412 0.68 0.859269
Target:  5'- aUGAGGucGGcuAGAUGCUGCGCCuuGGCc -3'
miRNA:   3'- -ACUCUuaCCucUUUACGACGUGG--CUG- -5'
12476 3' -49.8 NC_003324.1 + 25202 0.68 0.884072
Target:  5'- aUGAGAccaaGGAAGuUGcCUGCGCCGACu -3'
miRNA:   3'- -ACUCUuaccUCUUU-AC-GACGUGGCUG- -5'
12476 3' -49.8 NC_003324.1 + 41818 0.66 0.931781
Target:  5'- aGAGcAAUGGcGAucgGCUGCACCc-- -3'
miRNA:   3'- aCUC-UUACCuCUuuaCGACGUGGcug -5'
12476 3' -49.8 NC_003324.1 + 9562 0.66 0.947687
Target:  5'- gUGGGucUGGGGuggcGAUGCcgcaaGUACCGGCa -3'
miRNA:   3'- -ACUCuuACCUCu---UUACGa----CGUGGCUG- -5'
12476 3' -49.8 NC_003324.1 + 27190 0.66 0.947687
Target:  5'- cGAGAGcgaccgcgcUGGu---GUGCUGCGCCaGAUg -3'
miRNA:   3'- aCUCUU---------ACCucuuUACGACGUGG-CUG- -5'
12476 3' -49.8 NC_003324.1 + 18913 0.66 0.937385
Target:  5'- cGAGAccggcgugAUGGAGAcug---GCGCCGACc -3'
miRNA:   3'- aCUCU--------UACCUCUuuacgaCGUGGCUG- -5'
12476 3' -49.8 NC_003324.1 + 54082 0.66 0.928272
Target:  5'- cGAGAAUGuccgacauGGAAUGCaugaacacgcgucgGCGCCGACc -3'
miRNA:   3'- aCUCUUACcu------CUUUACGa-------------CGUGGCUG- -5'
12476 3' -49.8 NC_003324.1 + 48699 0.67 0.919657
Target:  5'- ------cGGAGccGGAUGCggGCGCCGACc -3'
miRNA:   3'- acucuuaCCUC--UUUACGa-CGUGGCUG- -5'
12476 3' -49.8 NC_003324.1 + 22149 0.67 0.899196
Target:  5'- -aAGAAgcaGGAGAAGg---GCGCCGACa -3'
miRNA:   3'- acUCUUa--CCUCUUUacgaCGUGGCUG- -5'
12476 3' -49.8 NC_003324.1 + 6786 0.69 0.832115
Target:  5'- gGAGAAaGGAGAA-UGCcGCcUCGACg -3'
miRNA:   3'- aCUCUUaCCUCUUuACGaCGuGGCUG- -5'
12476 3' -49.8 NC_003324.1 + 42417 0.71 0.717168
Target:  5'- -cGGAAUGGGGAAGUcGCucuaagucUGuCACCGGCg -3'
miRNA:   3'- acUCUUACCUCUUUA-CG--------AC-GUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.