miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12476 5' -54.3 NC_003324.1 + 12793 0.66 0.780225
Target:  5'- aUGGCGccugGCAGCaaaaccaucCAGcgUUUCGACGCg -3'
miRNA:   3'- aGCCGCca--CGUCG---------GUCa-AAAGCUGUG- -5'
12476 5' -54.3 NC_003324.1 + 45286 0.66 0.780225
Target:  5'- cUCGGCGaucuGUGCuuCCAGUUcgagcCGGCGCu -3'
miRNA:   3'- -AGCCGC----CACGucGGUCAAaa---GCUGUG- -5'
12476 5' -54.3 NC_003324.1 + 57380 0.66 0.770084
Target:  5'- cUCGGCGGa--GGCgAGgg--CGGCACg -3'
miRNA:   3'- -AGCCGCCacgUCGgUCaaaaGCUGUG- -5'
12476 5' -54.3 NC_003324.1 + 53717 0.66 0.770084
Target:  5'- aCGGCGGUaguucuuuuGgAGCCGGcgacgUUCGuCGCg -3'
miRNA:   3'- aGCCGCCA---------CgUCGGUCaa---AAGCuGUG- -5'
12476 5' -54.3 NC_003324.1 + 14492 0.66 0.768037
Target:  5'- gCGGaagcCGGUGCAGCCAacacugcgCGGCAg -3'
miRNA:   3'- aGCC----GCCACGUCGGUcaaaa---GCUGUg -5'
12476 5' -54.3 NC_003324.1 + 35579 0.67 0.728182
Target:  5'- gUCGGCGcuggaaGCAGCCGGUa--CGGCGa -3'
miRNA:   3'- -AGCCGCca----CGUCGGUCAaaaGCUGUg -5'
12476 5' -54.3 NC_003324.1 + 29809 0.67 0.728182
Target:  5'- -aGGCGaUGaGGCCAucGUUUUCGACAg -3'
miRNA:   3'- agCCGCcACgUCGGU--CAAAAGCUGUg -5'
12476 5' -54.3 NC_003324.1 + 31325 0.67 0.706596
Target:  5'- aCGcGCaGUGCGGCCGG----CGGCGCu -3'
miRNA:   3'- aGC-CGcCACGUCGGUCaaaaGCUGUG- -5'
12476 5' -54.3 NC_003324.1 + 8734 0.7 0.498655
Target:  5'- gCGGCGGUGUcggagaAGUCGGUgcgaUCGAuCACu -3'
miRNA:   3'- aGCCGCCACG------UCGGUCAaa--AGCU-GUG- -5'
12476 5' -54.3 NC_003324.1 + 8431 0.71 0.488242
Target:  5'- cCGGCugcaGGUGCAGgCGGaUUUgCGGCGCa -3'
miRNA:   3'- aGCCG----CCACGUCgGUCaAAA-GCUGUG- -5'
12476 5' -54.3 NC_003324.1 + 7757 0.71 0.482043
Target:  5'- gUCGGCGGUGUGcagcgacacauaaacGCCAGc---CGGCACu -3'
miRNA:   3'- -AGCCGCCACGU---------------CGGUCaaaaGCUGUG- -5'
12476 5' -54.3 NC_003324.1 + 14598 0.72 0.428098
Target:  5'- cCGGCGGcGCAGgCGGUag-CGugGCg -3'
miRNA:   3'- aGCCGCCaCGUCgGUCAaaaGCugUG- -5'
12476 5' -54.3 NC_003324.1 + 45432 1.1 0.001008
Target:  5'- aUCGGCGGUGCAGCCAGUUUUCGACACu -3'
miRNA:   3'- -AGCCGCCACGUCGGUCAAAAGCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.