miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12479 3' -58.2 NC_003324.1 + 53066 0.67 0.51955
Target:  5'- -uCCGCUUCAUUGgcG-GCagGUCGCGCu -3'
miRNA:   3'- guGGCGGAGUAGCuuCuCG--CGGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 35951 0.67 0.509308
Target:  5'- gACCGCgaCAUacuccGGuGUGCCGCGCu -3'
miRNA:   3'- gUGGCGgaGUAgcu--UCuCGCGGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 53210 0.67 0.499153
Target:  5'- uGCgGcCCUUacgGUCGggGAGCcagaccgucugGCCGUGCu -3'
miRNA:   3'- gUGgC-GGAG---UAGCuuCUCG-----------CGGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 56612 0.67 0.493103
Target:  5'- -uUCGCCcgCAUCGcauGccaaauguugugcgcAGCGCCGCGCu -3'
miRNA:   3'- guGGCGGa-GUAGCuu-C---------------UCGCGGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 50683 0.67 0.489088
Target:  5'- -uCUGCagCUCGUCGAGG-GCGgCGUGCc -3'
miRNA:   3'- guGGCG--GAGUAGCUUCuCGCgGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 33688 0.67 0.489088
Target:  5'- uCAUCGCC--GUCGGcaacGCGCUGCGCa -3'
miRNA:   3'- -GUGGCGGagUAGCUucu-CGCGGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 32295 0.68 0.469252
Target:  5'- cCAgCGUUUCGcccgauugggccUCGAAGA-UGCCGCGCa -3'
miRNA:   3'- -GUgGCGGAGU------------AGCUUCUcGCGGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 20735 0.68 0.469252
Target:  5'- uCGCCGCCUgGUCGAAGcacucCGCC-CGa -3'
miRNA:   3'- -GUGGCGGAgUAGCUUCuc---GCGGcGCg -5'
12479 3' -58.2 NC_003324.1 + 23257 0.68 0.459489
Target:  5'- gUACCGCgCUCGcCGAccauaccguGGGCGCCG-GCa -3'
miRNA:   3'- -GUGGCG-GAGUaGCUu--------CUCGCGGCgCG- -5'
12479 3' -58.2 NC_003324.1 + 45268 0.68 0.459489
Target:  5'- -cUCGCCUUccaaaaCGAGGAGCGCCaaauCGCg -3'
miRNA:   3'- guGGCGGAGua----GCUUCUCGCGGc---GCG- -5'
12479 3' -58.2 NC_003324.1 + 52749 0.68 0.459489
Target:  5'- aACCGCCUUGgugccCGuGGGGCaCUGCGCu -3'
miRNA:   3'- gUGGCGGAGUa----GCuUCUCGcGGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 47783 0.68 0.449835
Target:  5'- aGCaGCaugUCGUCGAGGAG-GCCGCGa -3'
miRNA:   3'- gUGgCGg--AGUAGCUUCUCgCGGCGCg -5'
12479 3' -58.2 NC_003324.1 + 27204 0.68 0.440294
Target:  5'- aACgGgCUCAagagCG-AGAGCGaCCGCGCu -3'
miRNA:   3'- gUGgCgGAGUa---GCuUCUCGC-GGCGCG- -5'
12479 3' -58.2 NC_003324.1 + 15738 0.68 0.440294
Target:  5'- gAUCGCgUCAUCG-AGcGCGCCGgGg -3'
miRNA:   3'- gUGGCGgAGUAGCuUCuCGCGGCgCg -5'
12479 3' -58.2 NC_003324.1 + 41648 0.68 0.43087
Target:  5'- -cCCGCuCUCGUCGgcG-GCGCgacguagccgaCGCGCa -3'
miRNA:   3'- guGGCG-GAGUAGCuuCuCGCG-----------GCGCG- -5'
12479 3' -58.2 NC_003324.1 + 41115 0.69 0.421564
Target:  5'- uCGCCGgCUCAcacUCGAAcAGCGagGCGCg -3'
miRNA:   3'- -GUGGCgGAGU---AGCUUcUCGCggCGCG- -5'
12479 3' -58.2 NC_003324.1 + 28644 0.69 0.421564
Target:  5'- gGCCGCCUUGUCGc---GCGUCGUGg -3'
miRNA:   3'- gUGGCGGAGUAGCuucuCGCGGCGCg -5'
12479 3' -58.2 NC_003324.1 + 20829 0.69 0.41238
Target:  5'- gCAUgGCCgaCAUCGAgaAGcaGGCGCCuGCGCu -3'
miRNA:   3'- -GUGgCGGa-GUAGCU--UC--UCGCGG-CGCG- -5'
12479 3' -58.2 NC_003324.1 + 42832 0.69 0.403322
Target:  5'- uGCCGauCCgcgCAUgGGAGAGCGCCcaCGCu -3'
miRNA:   3'- gUGGC--GGa--GUAgCUUCUCGCGGc-GCG- -5'
12479 3' -58.2 NC_003324.1 + 44013 0.69 0.403322
Target:  5'- uGCCGCCgggaUCAU-GccGAGCGCUGCGa -3'
miRNA:   3'- gUGGCGG----AGUAgCuuCUCGCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.