Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12480 | 3' | -63.2 | NC_003324.1 | + | 48722 | 1.05 | 0.000345 |
Target: 5'- aAAGGGCGCCAACCGCGUCGGCGCCAGc -3' miRNA: 3'- -UUCCCGCGGUUGGCGCAGCCGCGGUC- -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 16321 | 0.73 | 0.100264 |
Target: 5'- uAGGGcccuGCGCUGGCCGCGUCGGCacgGCCu- -3' miRNA: 3'- -UUCC----CGCGGUUGGCGCAGCCG---CGGuc -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 48060 | 0.73 | 0.103019 |
Target: 5'- -cGGGUcaGUCAG-CGCGUCGGUGCCGGu -3' miRNA: 3'- uuCCCG--CGGUUgGCGCAGCCGCGGUC- -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 23497 | 0.73 | 0.103019 |
Target: 5'- cAGGGCGCC-ACCGCG-CGGCcaacgagaaaGCCGa -3' miRNA: 3'- uUCCCGCGGuUGGCGCaGCCG----------CGGUc -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 45254 | 0.73 | 0.108745 |
Target: 5'- cGAGGaGCGCCaAAUCGCGUCcuacuucgaacGCGCCAGg -3' miRNA: 3'- -UUCC-CGCGG-UUGGCGCAGc----------CGCGGUC- -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 23126 | 0.72 | 0.12439 |
Target: 5'- uGGGGCGCCGAUUuCGUCaagcucuacccgGGCGCCAa -3' miRNA: 3'- uUCCCGCGGUUGGcGCAG------------CCGCGGUc -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 1567 | 0.71 | 0.144758 |
Target: 5'- aAAGGGCGCCAGcCCGCGaUCaccaaucucgacaaGGCGCgCGa -3' miRNA: 3'- -UUCCCGCGGUU-GGCGC-AG--------------CCGCG-GUc -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 25315 | 0.7 | 0.166383 |
Target: 5'- uAAGGGCgGCCAggugcucgaACCGUcaGUCGGCG-CAGg -3' miRNA: 3'- -UUCCCG-CGGU---------UGGCG--CAGCCGCgGUC- -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 31856 | 0.7 | 0.175271 |
Target: 5'- -cGGGCccgaagagGCCGGCagGCGUUGGCGCCc- -3' miRNA: 3'- uuCCCG--------CGGUUGg-CGCAGCCGCGGuc -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 48803 | 0.7 | 0.175271 |
Target: 5'- --uGGCGCCGACgCG-GUUGGCGCCc- -3' miRNA: 3'- uucCCGCGGUUG-GCgCAGCCGCGGuc -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 21094 | 0.69 | 0.189396 |
Target: 5'- --cGGCGCguGCUGCGUCGGCuuccacGUCGGg -3' miRNA: 3'- uucCCGCGguUGGCGCAGCCG------CGGUC- -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 38073 | 0.69 | 0.194323 |
Target: 5'- -cGGuacuGCGCCuucuggcgAAgCGCGUCGGCGCCGu -3' miRNA: 3'- uuCC----CGCGG--------UUgGCGCAGCCGCGGUc -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 13172 | 0.69 | 0.204512 |
Target: 5'- cGAGGcuGCGUCGGCgGCgGUCGGCGgCGGc -3' miRNA: 3'- -UUCC--CGCGGUUGgCG-CAGCCGCgGUC- -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 5421 | 0.69 | 0.209778 |
Target: 5'- cGGGGCGCCGuuggugUCGagauCGUCGGCGUCGa -3' miRNA: 3'- uUCCCGCGGUu-----GGC----GCAGCCGCGGUc -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 20514 | 0.68 | 0.215161 |
Target: 5'- cGAGGGCgugcccGCCGACCGCaagcgcccaUCaGCGCCGGc -3' miRNA: 3'- -UUCCCG------CGGUUGGCGc--------AGcCGCGGUC- -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 3419 | 0.68 | 0.226283 |
Target: 5'- gAAGGGaGCC-ACUGCaGUCGGCGaCCGu -3' miRNA: 3'- -UUCCCgCGGuUGGCG-CAGCCGC-GGUc -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 29955 | 0.68 | 0.226283 |
Target: 5'- gAGGGGCGUC--CUGCGUagcggCGGCaGCCGGg -3' miRNA: 3'- -UUCCCGCGGuuGGCGCA-----GCCG-CGGUC- -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 4938 | 0.68 | 0.237887 |
Target: 5'- cAGGGCucgaCCGGCCGCaacguuguuGcCGGCGCCAu -3' miRNA: 3'- uUCCCGc---GGUUGGCG---------CaGCCGCGGUc -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 48687 | 0.67 | 0.282452 |
Target: 5'- -cGGGCGCCGACCuGCGugucgauuggguUCGGCuucuUCGGg -3' miRNA: 3'- uuCCCGCGGUUGG-CGC------------AGCCGc---GGUC- -5' |
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12480 | 3' | -63.2 | NC_003324.1 | + | 31118 | 0.67 | 0.289333 |
Target: 5'- cAGGaguugaaCGCCGACCGCGcCGGuCGCUAc -3' miRNA: 3'- uUCCc------GCGGUUGGCGCaGCC-GCGGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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