miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12480 5' -54.7 NC_003324.1 + 48757 1.1 0.000952
Target:  5'- aGGCCAUCAGCGAAGCGCUCAAGGUCGc -3'
miRNA:   3'- -CCGGUAGUCGCUUCGCGAGUUCCAGC- -5'
12480 5' -54.7 NC_003324.1 + 18670 0.66 0.770082
Target:  5'- uGCCcuugCGGUggauGAAGCGCUUgcgugcggaAAGGUCGg -3'
miRNA:   3'- cCGGua--GUCG----CUUCGCGAG---------UUCCAGC- -5'
12480 5' -54.7 NC_003324.1 + 14061 0.66 0.759883
Target:  5'- cGCCAUCGcccgauccGCaGAucggcaaagcAGCGCUCAAGGaagCGg -3'
miRNA:   3'- cCGGUAGU--------CG-CU----------UCGCGAGUUCCa--GC- -5'
12480 5' -54.7 NC_003324.1 + 14123 0.66 0.759883
Target:  5'- uGGCUGgaguuuUCGcGCGAGGCGUUUgcGGUCu -3'
miRNA:   3'- -CCGGU------AGU-CGCUUCGCGAGuuCCAGc -5'
12480 5' -54.7 NC_003324.1 + 3801 0.66 0.749554
Target:  5'- aGCCAuUCAGCGggGauuaCGCUUuuggcGGUCa -3'
miRNA:   3'- cCGGU-AGUCGCuuC----GCGAGuu---CCAGc -5'
12480 5' -54.7 NC_003324.1 + 2176 0.66 0.739105
Target:  5'- uGCCGaCAGCGcagGAGCuGCUCAcgGGGcCGa -3'
miRNA:   3'- cCGGUaGUCGC---UUCG-CGAGU--UCCaGC- -5'
12480 5' -54.7 NC_003324.1 + 12887 0.67 0.67454
Target:  5'- cGCCAUCGuCGAugGGCGCgguguuGGUCGa -3'
miRNA:   3'- cCGGUAGUcGCU--UCGCGaguu--CCAGC- -5'
12480 5' -54.7 NC_003324.1 + 19368 0.68 0.660277
Target:  5'- cGuCCGUCAGCGAuggaucgacgccGGCGCgCGucgcgccgugcaugAGGUCGg -3'
miRNA:   3'- cC-GGUAGUCGCU------------UCGCGaGU--------------UCCAGC- -5'
12480 5' -54.7 NC_003324.1 + 21501 0.68 0.652577
Target:  5'- cGcCCGUC-GCGu--UGCUCAAGGUCGg -3'
miRNA:   3'- cC-GGUAGuCGCuucGCGAGUUCCAGC- -5'
12480 5' -54.7 NC_003324.1 + 24824 0.68 0.652577
Target:  5'- cGGCa---GGCGGAucGCGCcgaCAAGGUCGg -3'
miRNA:   3'- -CCGguagUCGCUU--CGCGa--GUUCCAGC- -5'
12480 5' -54.7 NC_003324.1 + 14523 0.75 0.266128
Target:  5'- aGGgCGUCcGCGAcaaggcgcuGGCGCUCAAGGcCGa -3'
miRNA:   3'- -CCgGUAGuCGCU---------UCGCGAGUUCCaGC- -5'
12480 5' -54.7 NC_003324.1 + 49526 0.73 0.341335
Target:  5'- cGGCCGUaucgagCGGCGAGGCGaCgugCAuGGUCGu -3'
miRNA:   3'- -CCGGUA------GUCGCUUCGC-Ga--GUuCCAGC- -5'
12480 5' -54.7 NC_003324.1 + 45690 0.69 0.586553
Target:  5'- gGGC--UCGGCGAGGCGUgagCAGGG-Ca -3'
miRNA:   3'- -CCGguAGUCGCUUCGCGa--GUUCCaGc -5'
12480 5' -54.7 NC_003324.1 + 21859 0.69 0.597514
Target:  5'- gGGCCuccUCGGCGGccuuGGCcuucUUCGGGGUCGa -3'
miRNA:   3'- -CCGGu--AGUCGCU----UCGc---GAGUUCCAGC- -5'
12480 5' -54.7 NC_003324.1 + 30102 0.68 0.630538
Target:  5'- cGCCuucgGUCAGCGAuuGCGa--AGGGUCGa -3'
miRNA:   3'- cCGG----UAGUCGCUu-CGCgagUUCCAGC- -5'
12480 5' -54.7 NC_003324.1 + 14897 0.68 0.641562
Target:  5'- -cCCGagGGCGAcGCGCUCGAcgcGGUCa -3'
miRNA:   3'- ccGGUagUCGCUuCGCGAGUU---CCAGc -5'
12480 5' -54.7 NC_003324.1 + 11220 0.78 0.169649
Target:  5'- cGCCAgacCGGCGAAGCGgacCAAGGUCGg -3'
miRNA:   3'- cCGGUa--GUCGCUUCGCga-GUUCCAGC- -5'
12480 5' -54.7 NC_003324.1 + 6202 0.66 0.749554
Target:  5'- cGCUAUCGGCGuAGGCGC---GGGUa- -3'
miRNA:   3'- cCGGUAGUCGC-UUCGCGaguUCCAgc -5'
12480 5' -54.7 NC_003324.1 + 35226 0.66 0.749554
Target:  5'- cGCCGaaGGUGAcgaaGGCGCU-GAGGUCa -3'
miRNA:   3'- cCGGUagUCGCU----UCGCGAgUUCCAGc -5'
12480 5' -54.7 NC_003324.1 + 56217 0.67 0.717893
Target:  5'- cGGCCAUaaagCGGcCGAuGUGUUCcGGGUUGg -3'
miRNA:   3'- -CCGGUA----GUC-GCUuCGCGAGuUCCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.