Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12481 | 3' | -55.5 | NC_003324.1 | + | 1482 | 0.66 | 0.687706 |
Target: 5'- gCGAAGaacgcccaGCACCGUCGGC-GCaUCGAUg -3' miRNA: 3'- gGCUUC--------CGUGGUAGCUGuCGgAGCUA- -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 12082 | 0.68 | 0.589294 |
Target: 5'- aCCGGuaagacGGGCACCGgucuguaccugaUCGcggagcgcGCGGCCUCGGc -3' miRNA: 3'- -GGCU------UCCGUGGU------------AGC--------UGUCGGAGCUa -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 13180 | 0.7 | 0.473251 |
Target: 5'- aCCGucagcGAGGCugCGUCGGCGGCggUCGGc -3' miRNA: 3'- -GGC-----UUCCGugGUAGCUGUCGg-AGCUa -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 19002 | 0.72 | 0.344434 |
Target: 5'- aCGgcGGCugCAcgCGGCuGGCCUCGAa -3' miRNA: 3'- gGCuuCCGugGUa-GCUG-UCGGAGCUa -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 20155 | 0.68 | 0.600209 |
Target: 5'- aUCG-AGGCucgauCCAgaacgcugcCGGCAGCCUCGGUc -3' miRNA: 3'- -GGCuUCCGu----GGUa--------GCUGUCGGAGCUA- -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 20593 | 0.68 | 0.600209 |
Target: 5'- uCCGGugcuguGGCGCCGUCGcCAGUgacUUCGAc -3' miRNA: 3'- -GGCUu-----CCGUGGUAGCuGUCG---GAGCUa -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 22099 | 0.68 | 0.589294 |
Target: 5'- gCGcAAGGCugCGcUCGACAugcGCCUCGu- -3' miRNA: 3'- gGC-UUCCGugGU-AGCUGU---CGGAGCua -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 23674 | 0.69 | 0.528003 |
Target: 5'- gCCGGuauccacGGcGCGCCgggcuucacaucgauGUCGACuGCCUCGAUg -3' miRNA: 3'- -GGCU-------UC-CGUGG---------------UAGCUGuCGGAGCUA- -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 26042 | 0.72 | 0.387464 |
Target: 5'- gCCGAAGGCACCAaCGcCAGCaaUGGUc -3' miRNA: 3'- -GGCUUCCGUGGUaGCuGUCGgaGCUA- -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 28331 | 0.7 | 0.443549 |
Target: 5'- aCCGAuccGGCACCAgUCG-CAGCagUCGAUg -3' miRNA: 3'- -GGCUu--CCGUGGU-AGCuGUCGg-AGCUA- -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 28980 | 0.68 | 0.611151 |
Target: 5'- aCCGAAuGCAUCuucacCGGCAGCgUCGAUu -3' miRNA: 3'- -GGCUUcCGUGGua---GCUGUCGgAGCUA- -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 29362 | 0.66 | 0.730515 |
Target: 5'- cCUGAuaGGGCuuGCCcUCGucggugacgacaACGGCCUCGGUa -3' miRNA: 3'- -GGCU--UCCG--UGGuAGC------------UGUCGGAGCUA- -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 30384 | 0.66 | 0.719931 |
Target: 5'- uCCGGcgucgcuacAGGCAUguUCGGCGGCUUgGGc -3' miRNA: 3'- -GGCU---------UCCGUGguAGCUGUCGGAgCUa -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 30563 | 0.67 | 0.676844 |
Target: 5'- uCCGAGGGC-CUGcUCGGCGGCgC-CGAUu -3' miRNA: 3'- -GGCUUCCGuGGU-AGCUGUCG-GaGCUA- -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 31763 | 0.69 | 0.50392 |
Target: 5'- aCUGggGGCGCCAaCGccugcCGGCCUCu-- -3' miRNA: 3'- -GGCuuCCGUGGUaGCu----GUCGGAGcua -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 38346 | 0.68 | 0.578416 |
Target: 5'- aCGAGGGCACCGgggCGGCGcuggucGCCgUCGu- -3' miRNA: 3'- gGCUUCCGUGGUa--GCUGU------CGG-AGCua -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 38943 | 0.66 | 0.719931 |
Target: 5'- -aGuAGGCGCCGucUCGACccuuGGCCgUCGAUu -3' miRNA: 3'- ggCuUCCGUGGU--AGCUG----UCGG-AGCUA- -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 39415 | 0.68 | 0.578416 |
Target: 5'- uCCGAAGGCucGCCAgCG-CGGCUucUCGAc -3' miRNA: 3'- -GGCUUCCG--UGGUaGCuGUCGG--AGCUa -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 41305 | 0.68 | 0.593656 |
Target: 5'- gCCGugcGGCcuuuCCAUCGcgaucacgaugucgaACGGCCUCGAa -3' miRNA: 3'- -GGCuu-CCGu---GGUAGC---------------UGUCGGAGCUa -5' |
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12481 | 3' | -55.5 | NC_003324.1 | + | 41456 | 0.66 | 0.730515 |
Target: 5'- aCCGAAGGCGgCAUUGGuaaggggacgcgUAGCCaCGGg -3' miRNA: 3'- -GGCUUCCGUgGUAGCU------------GUCGGaGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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