miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12481 5' -52.6 NC_003324.1 + 5324 0.66 0.879515
Target:  5'- uGAUCcUCgacGCCGACGAUCuCGAcaccaACGg -3'
miRNA:   3'- gCUAGaAGga-CGGCUGCUAG-GCU-----UGC- -5'
12481 5' -52.6 NC_003324.1 + 40248 0.67 0.847001
Target:  5'- uGAUgUUCCUGUCGAaGGUgUCGGACa -3'
miRNA:   3'- gCUAgAAGGACGGCUgCUA-GGCUUGc -5'
12481 5' -52.6 NC_003324.1 + 21539 0.67 0.847001
Target:  5'- aCGAgcUCUa--UGCCGAaGAUCCGGAUGg -3'
miRNA:   3'- -GCU--AGAaggACGGCUgCUAGGCUUGC- -5'
12481 5' -52.6 NC_003324.1 + 47575 0.67 0.84614
Target:  5'- cCGAUCgacCCUcGCCGuCGAgccggaaguuccgUCCGAGCu -3'
miRNA:   3'- -GCUAGaa-GGA-CGGCuGCU-------------AGGCUUGc -5'
12481 5' -52.6 NC_003324.1 + 9060 0.67 0.838288
Target:  5'- aCGGUCaacgUgCUGCCGACGcgCUGuACa -3'
miRNA:   3'- -GCUAGa---AgGACGGCUGCuaGGCuUGc -5'
12481 5' -52.6 NC_003324.1 + 11846 0.67 0.829358
Target:  5'- -aGUCUgUCCUGCgCGAcCGggCCGGGCa -3'
miRNA:   3'- gcUAGA-AGGACG-GCU-GCuaGGCUUGc -5'
12481 5' -52.6 NC_003324.1 + 24632 0.67 0.827547
Target:  5'- aCGAUCUUCCgGCacugcucuccaaGGCcAUCCGGACc -3'
miRNA:   3'- -GCUAGAAGGaCGg-----------CUGcUAGGCUUGc -5'
12481 5' -52.6 NC_003324.1 + 29897 0.68 0.7975
Target:  5'- gCGAUCUUcggcgcgcugcuggCCaUGCUGgacggcgcggcccACGGUCCGGACGg -3'
miRNA:   3'- -GCUAGAA--------------GG-ACGGC-------------UGCUAGGCUUGC- -5'
12481 5' -52.6 NC_003324.1 + 51376 0.69 0.740875
Target:  5'- uGAUCgugacgCCUGCCGGCGGcugaUCCuuGCa -3'
miRNA:   3'- gCUAGaa----GGACGGCUGCU----AGGcuUGc -5'
12481 5' -52.6 NC_003324.1 + 14572 0.69 0.740875
Target:  5'- gGGUCgcggCCUGCCGGCGcaagcggCCGGcgGCGc -3'
miRNA:   3'- gCUAGaa--GGACGGCUGCua-----GGCU--UGC- -5'
12481 5' -52.6 NC_003324.1 + 31041 0.69 0.708994
Target:  5'- gCGGUCggcguucaacUCCUGCUGACGcgCUGcGACGg -3'
miRNA:   3'- -GCUAGa---------AGGACGGCUGCuaGGC-UUGC- -5'
12481 5' -52.6 NC_003324.1 + 17474 0.73 0.523806
Target:  5'- -----gUCCUGCCGuCGcgCCGAGCGu -3'
miRNA:   3'- gcuagaAGGACGGCuGCuaGGCUUGC- -5'
12481 5' -52.6 NC_003324.1 + 1182 0.73 0.513268
Target:  5'- aGAgacgCUgaaaUCCgGCCG-CGAUCCGAACGu -3'
miRNA:   3'- gCUa---GA----AGGaCGGCuGCUAGGCUUGC- -5'
12481 5' -52.6 NC_003324.1 + 49202 1.08 0.002659
Target:  5'- uCGAUCUUCCUGCCGACGAUCCGAACGc -3'
miRNA:   3'- -GCUAGAAGGACGGCUGCUAGGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.