miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12482 3' -57 NC_003324.1 + 32131 0.66 0.634268
Target:  5'- uGGuCUccGCCucGG-GCCGGgCCGCc -3'
miRNA:   3'- uCCuGAuaCGGuuCCaCGGCCaGGCG- -5'
12482 3' -57 NC_003324.1 + 19376 0.66 0.63318
Target:  5'- -uGGCUAUGCCGcccaAGG-GCCGGgaguuguUCgGCa -3'
miRNA:   3'- ucCUGAUACGGU----UCCaCGGCC-------AGgCG- -5'
12482 3' -57 NC_003324.1 + 37646 0.66 0.612523
Target:  5'- cAGGAg-GUcGCCGAGGU---GGUCCGCa -3'
miRNA:   3'- -UCCUgaUA-CGGUUCCAcggCCAGGCG- -5'
12482 3' -57 NC_003324.1 + 37139 0.67 0.537381
Target:  5'- cGGAUUcgGCCAAGGUuggcGUCGG-CUGg -3'
miRNA:   3'- uCCUGAuaCGGUUCCA----CGGCCaGGCg -5'
12482 3' -57 NC_003324.1 + 22057 0.68 0.526874
Target:  5'- uGGcGACUAUGCCGgcuccaAGGUGCaucgcgCCGCc -3'
miRNA:   3'- -UC-CUGAUACGGU------UCCACGgcca--GGCG- -5'
12482 3' -57 NC_003324.1 + 29437 0.68 0.516445
Target:  5'- gAGGGCaa-GCCcuaucAGGUGCCGGUCg-- -3'
miRNA:   3'- -UCCUGauaCGGu----UCCACGGCCAGgcg -5'
12482 3' -57 NC_003324.1 + 16032 0.68 0.514369
Target:  5'- cGGACUGgcuggugaugagGCCAAGuucgacgacuUGCCGG-CCGCg -3'
miRNA:   3'- uCCUGAUa-----------CGGUUCc---------ACGGCCaGGCG- -5'
12482 3' -57 NC_003324.1 + 24406 0.68 0.485684
Target:  5'- aAGGACcgcguUGCCGgcauGGUG-CGcGUCCGCg -3'
miRNA:   3'- -UCCUGau---ACGGUu---CCACgGC-CAGGCG- -5'
12482 3' -57 NC_003324.1 + 14889 0.69 0.465668
Target:  5'- cAGGAagcUGCCGA--UGCCGG-CCGCg -3'
miRNA:   3'- -UCCUgauACGGUUccACGGCCaGGCG- -5'
12482 3' -57 NC_003324.1 + 240 0.69 0.465668
Target:  5'- uAGGGCUGgcgGCCGcaucGCCGGUUCGUu -3'
miRNA:   3'- -UCCUGAUa--CGGUuccaCGGCCAGGCG- -5'
12482 3' -57 NC_003324.1 + 42774 0.69 0.44609
Target:  5'- uGGGAUgAUGCCucgccagcGGuUGCCGGUCCu- -3'
miRNA:   3'- -UCCUGaUACGGuu------CC-ACGGCCAGGcg -5'
12482 3' -57 NC_003324.1 + 11836 0.7 0.372691
Target:  5'- -uGACUAUGCCcuuAAGGUGCCGcGcCCa- -3'
miRNA:   3'- ucCUGAUACGG---UUCCACGGC-CaGGcg -5'
12482 3' -57 NC_003324.1 + 53810 0.73 0.272039
Target:  5'- uGGGGCUGcaCCAAGGUcucGCCGGgCUGCg -3'
miRNA:   3'- -UCCUGAUacGGUUCCA---CGGCCaGGCG- -5'
12482 3' -57 NC_003324.1 + 23964 0.75 0.204953
Target:  5'- cGGACgcgAUcGUCGAGGaGCuCGGUCCGCu -3'
miRNA:   3'- uCCUGa--UA-CGGUUCCaCG-GCCAGGCG- -5'
12482 3' -57 NC_003324.1 + 49474 1.12 0.00041
Target:  5'- gAGGACUAUGCCAAGGUGCCGGUCCGCa -3'
miRNA:   3'- -UCCUGAUACGGUUCCACGGCCAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.