Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12482 | 3' | -57 | NC_003324.1 | + | 32131 | 0.66 | 0.634268 |
Target: 5'- uGGuCUccGCCucGG-GCCGGgCCGCc -3' miRNA: 3'- uCCuGAuaCGGuuCCaCGGCCaGGCG- -5' |
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12482 | 3' | -57 | NC_003324.1 | + | 19376 | 0.66 | 0.63318 |
Target: 5'- -uGGCUAUGCCGcccaAGG-GCCGGgaguuguUCgGCa -3' miRNA: 3'- ucCUGAUACGGU----UCCaCGGCC-------AGgCG- -5' |
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12482 | 3' | -57 | NC_003324.1 | + | 37646 | 0.66 | 0.612523 |
Target: 5'- cAGGAg-GUcGCCGAGGU---GGUCCGCa -3' miRNA: 3'- -UCCUgaUA-CGGUUCCAcggCCAGGCG- -5' |
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12482 | 3' | -57 | NC_003324.1 | + | 37139 | 0.67 | 0.537381 |
Target: 5'- cGGAUUcgGCCAAGGUuggcGUCGG-CUGg -3' miRNA: 3'- uCCUGAuaCGGUUCCA----CGGCCaGGCg -5' |
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12482 | 3' | -57 | NC_003324.1 | + | 22057 | 0.68 | 0.526874 |
Target: 5'- uGGcGACUAUGCCGgcuccaAGGUGCaucgcgCCGCc -3' miRNA: 3'- -UC-CUGAUACGGU------UCCACGgcca--GGCG- -5' |
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12482 | 3' | -57 | NC_003324.1 | + | 29437 | 0.68 | 0.516445 |
Target: 5'- gAGGGCaa-GCCcuaucAGGUGCCGGUCg-- -3' miRNA: 3'- -UCCUGauaCGGu----UCCACGGCCAGgcg -5' |
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12482 | 3' | -57 | NC_003324.1 | + | 16032 | 0.68 | 0.514369 |
Target: 5'- cGGACUGgcuggugaugagGCCAAGuucgacgacuUGCCGG-CCGCg -3' miRNA: 3'- uCCUGAUa-----------CGGUUCc---------ACGGCCaGGCG- -5' |
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12482 | 3' | -57 | NC_003324.1 | + | 24406 | 0.68 | 0.485684 |
Target: 5'- aAGGACcgcguUGCCGgcauGGUG-CGcGUCCGCg -3' miRNA: 3'- -UCCUGau---ACGGUu---CCACgGC-CAGGCG- -5' |
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12482 | 3' | -57 | NC_003324.1 | + | 240 | 0.69 | 0.465668 |
Target: 5'- uAGGGCUGgcgGCCGcaucGCCGGUUCGUu -3' miRNA: 3'- -UCCUGAUa--CGGUuccaCGGCCAGGCG- -5' |
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12482 | 3' | -57 | NC_003324.1 | + | 14889 | 0.69 | 0.465668 |
Target: 5'- cAGGAagcUGCCGA--UGCCGG-CCGCg -3' miRNA: 3'- -UCCUgauACGGUUccACGGCCaGGCG- -5' |
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12482 | 3' | -57 | NC_003324.1 | + | 42774 | 0.69 | 0.44609 |
Target: 5'- uGGGAUgAUGCCucgccagcGGuUGCCGGUCCu- -3' miRNA: 3'- -UCCUGaUACGGuu------CC-ACGGCCAGGcg -5' |
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12482 | 3' | -57 | NC_003324.1 | + | 11836 | 0.7 | 0.372691 |
Target: 5'- -uGACUAUGCCcuuAAGGUGCCGcGcCCa- -3' miRNA: 3'- ucCUGAUACGG---UUCCACGGC-CaGGcg -5' |
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12482 | 3' | -57 | NC_003324.1 | + | 53810 | 0.73 | 0.272039 |
Target: 5'- uGGGGCUGcaCCAAGGUcucGCCGGgCUGCg -3' miRNA: 3'- -UCCUGAUacGGUUCCA---CGGCCaGGCG- -5' |
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12482 | 3' | -57 | NC_003324.1 | + | 23964 | 0.75 | 0.204953 |
Target: 5'- cGGACgcgAUcGUCGAGGaGCuCGGUCCGCu -3' miRNA: 3'- uCCUGa--UA-CGGUUCCaCG-GCCAGGCG- -5' |
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12482 | 3' | -57 | NC_003324.1 | + | 49474 | 1.12 | 0.00041 |
Target: 5'- gAGGACUAUGCCAAGGUGCCGGUCCGCa -3' miRNA: 3'- -UCCUGAUACGGUUCCACGGCCAGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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