miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12483 3' -58.4 NC_003324.1 + 18288 0.66 0.610876
Target:  5'- -gCCGAC-GCGCgggcaaUCGCUGCCCc -3'
miRNA:   3'- ggGGCUGcCGUGaauag-GGCGACGGG- -5'
12483 3' -58.4 NC_003324.1 + 12897 0.66 0.607693
Target:  5'- cCCCUuGCGGCGCgUcgaaacgcuggaugGUUuuGCUGCCa -3'
miRNA:   3'- -GGGGcUGCCGUGaA--------------UAGggCGACGGg -5'
12483 3' -58.4 NC_003324.1 + 24668 0.66 0.589697
Target:  5'- gCCCCGAUGauccuGCGCUggucgCCCGCaGCg- -3'
miRNA:   3'- -GGGGCUGC-----CGUGAaua--GGGCGaCGgg -5'
12483 3' -58.4 NC_003324.1 + 21458 0.66 0.579153
Target:  5'- aUCCGGaucuuCGGCAUagagCUCGUUGCCCu -3'
miRNA:   3'- gGGGCU-----GCCGUGaauaGGGCGACGGG- -5'
12483 3' -58.4 NC_003324.1 + 42182 0.66 0.579153
Target:  5'- gCCgaaCGACGGCACUgcgCCggaGUgaucgGCCCa -3'
miRNA:   3'- -GGg--GCUGCCGUGAauaGGg--CGa----CGGG- -5'
12483 3' -58.4 NC_003324.1 + 28589 0.66 0.568651
Target:  5'- uUuuGGCGGUucgcgGCUUccgCCCGCUgucGCCCu -3'
miRNA:   3'- gGggCUGCCG-----UGAAua-GGGCGA---CGGG- -5'
12483 3' -58.4 NC_003324.1 + 4286 0.66 0.568651
Target:  5'- uCCgCCGGUGGCAagaUGUCCCGCaagcGCaCCg -3'
miRNA:   3'- -GG-GGCUGCCGUga-AUAGGGCGa---CG-GG- -5'
12483 3' -58.4 NC_003324.1 + 49087 0.66 0.558196
Target:  5'- -gCCGaaaGCGGCGucUAUUUCGCUGCCg -3'
miRNA:   3'- ggGGC---UGCCGUgaAUAGGGCGACGGg -5'
12483 3' -58.4 NC_003324.1 + 29278 0.66 0.558196
Target:  5'- gCUCGAuCGGCGgaUUGcguuccagcUCCUGCUGCUCg -3'
miRNA:   3'- gGGGCU-GCCGUg-AAU---------AGGGCGACGGG- -5'
12483 3' -58.4 NC_003324.1 + 28356 0.67 0.547797
Target:  5'- gCCCGGaacaucguCGGC-CUUGUCCCaaaGCUccaacggauaccGCCCa -3'
miRNA:   3'- gGGGCU--------GCCGuGAAUAGGG---CGA------------CGGG- -5'
12483 3' -58.4 NC_003324.1 + 15629 0.67 0.53746
Target:  5'- aCCCGGuCGGCGCUU-UCCaUGUcGCCg -3'
miRNA:   3'- gGGGCU-GCCGUGAAuAGG-GCGaCGGg -5'
12483 3' -58.4 NC_003324.1 + 7408 0.67 0.528214
Target:  5'- gCUCGACcaauggGGCACggagauuggcaaggGUgCUGCUGCCCg -3'
miRNA:   3'- gGGGCUG------CCGUGaa------------UAgGGCGACGGG- -5'
12483 3' -58.4 NC_003324.1 + 46549 0.67 0.50688
Target:  5'- uUCCCG-UGGCugUUcAUCCgGaaGCCCu -3'
miRNA:   3'- -GGGGCuGCCGugAA-UAGGgCgaCGGG- -5'
12483 3' -58.4 NC_003324.1 + 57266 0.68 0.48691
Target:  5'- -aCC-ACGGCGCUUGUCUgugaGCggcagGCCCu -3'
miRNA:   3'- ggGGcUGCCGUGAAUAGGg---CGa----CGGG- -5'
12483 3' -58.4 NC_003324.1 + 38442 0.68 0.478046
Target:  5'- uCCCgcaCGACGGCGaccagcgccgcCCCGgUGCCCu -3'
miRNA:   3'- -GGG---GCUGCCGUgaaua------GGGCgACGGG- -5'
12483 3' -58.4 NC_003324.1 + 3077 0.68 0.477065
Target:  5'- -gCCGcACGGCGC---UCCCGCUcuuGCCa -3'
miRNA:   3'- ggGGC-UGCCGUGaauAGGGCGA---CGGg -5'
12483 3' -58.4 NC_003324.1 + 32638 0.68 0.476086
Target:  5'- gCUgGAUGGCACgagcgcaacgGagacgaaaagcucUCCCGCUGCCUc -3'
miRNA:   3'- gGGgCUGCCGUGaa--------U-------------AGGGCGACGGG- -5'
12483 3' -58.4 NC_003324.1 + 43145 0.68 0.448145
Target:  5'- uCCUCGACGGCgaGCUUGUUgaGCgagcGCCa -3'
miRNA:   3'- -GGGGCUGCCG--UGAAUAGggCGa---CGGg -5'
12483 3' -58.4 NC_003324.1 + 34614 0.69 0.438722
Target:  5'- gCUCCGGgaGGCGCUgggcgAUUCCGCUGgCg -3'
miRNA:   3'- -GGGGCUg-CCGUGAa----UAGGGCGACgGg -5'
12483 3' -58.4 NC_003324.1 + 7864 0.69 0.429413
Target:  5'- gCCgCGGCGGCAaag--CCCGUUGCg- -3'
miRNA:   3'- -GGgGCUGCCGUgaauaGGGCGACGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.