miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12483 5' -57.8 NC_003324.1 + 49739 1.06 0.000773
Target:  5'- gAUGGUUCAGCGGGCGCACCACCAUCAc -3'
miRNA:   3'- -UACCAAGUCGCCCGCGUGGUGGUAGU- -5'
12483 5' -57.8 NC_003324.1 + 24674 0.67 0.491697
Target:  5'- uUGGUUgAGCGGGacaGCCuuGCCAUCc -3'
miRNA:   3'- uACCAAgUCGCCCgcgUGG--UGGUAGu -5'
12483 5' -57.8 NC_003324.1 + 34598 0.67 0.471374
Target:  5'- -gGGUUCAGCGGGUcgagggacGCGCuCugCAg-- -3'
miRNA:   3'- uaCCAAGUCGCCCG--------CGUG-GugGUagu -5'
12483 5' -57.8 NC_003324.1 + 40441 0.68 0.441716
Target:  5'- uUGGggUCuGCuuGCGUGCCGCCAUCAg -3'
miRNA:   3'- uACCa-AGuCGccCGCGUGGUGGUAGU- -5'
12483 5' -57.8 NC_003324.1 + 20278 0.68 0.413143
Target:  5'- -gGGcUCAGCGGGC-CACCGCUc--- -3'
miRNA:   3'- uaCCaAGUCGCCCGcGUGGUGGuagu -5'
12483 5' -57.8 NC_003324.1 + 52228 0.7 0.334654
Target:  5'- -gGGUUCGGCGGGCuauCACUcgGCCAguUCGu -3'
miRNA:   3'- uaCCAAGUCGCCCGc--GUGG--UGGU--AGU- -5'
12483 5' -57.8 NC_003324.1 + 373 0.7 0.303443
Target:  5'- -gGGUcUCAGCGcGGCGCggcuaACCACCGcCAa -3'
miRNA:   3'- uaCCA-AGUCGC-CCGCG-----UGGUGGUaGU- -5'
12483 5' -57.8 NC_003324.1 + 47925 0.68 0.413143
Target:  5'- -cGGuUUCAGC-GGCaGCGCCGCC-UCAu -3'
miRNA:   3'- uaCC-AAGUCGcCCG-CGUGGUGGuAGU- -5'
12483 5' -57.8 NC_003324.1 + 28597 0.68 0.413143
Target:  5'- aGUGGUcUCGGUccgaaGGGCGC-CCgcguuGCCAUCAa -3'
miRNA:   3'- -UACCA-AGUCG-----CCCGCGuGG-----UGGUAGU- -5'
12483 5' -57.8 NC_003324.1 + 9548 0.68 0.421596
Target:  5'- -aGGU--AGCGGGCcgauccaGCAUCGCCAUUAu -3'
miRNA:   3'- uaCCAagUCGCCCG-------CGUGGUGGUAGU- -5'
12483 5' -57.8 NC_003324.1 + 5546 0.68 0.441716
Target:  5'- cGUGG---GGCGGGCGaCGCCGCCu--- -3'
miRNA:   3'- -UACCaagUCGCCCGC-GUGGUGGuagu -5'
12483 5' -57.8 NC_003324.1 + 34831 0.67 0.461374
Target:  5'- -aGGaUCAGCGGaCcucCGCCACCGUCGu -3'
miRNA:   3'- uaCCaAGUCGCCcGc--GUGGUGGUAGU- -5'
12483 5' -57.8 NC_003324.1 + 31303 0.67 0.502009
Target:  5'- cUGGcgCuGGCGGGgGCAUCGUCAUCGa -3'
miRNA:   3'- uACCaaG-UCGCCCgCGUGGUGGUAGU- -5'
12483 5' -57.8 NC_003324.1 + 25821 0.66 0.564553
Target:  5'- -gGGUUC-GC-GGCGCACCgagagaaguucacGCCGUCu -3'
miRNA:   3'- uaCCAAGuCGcCCGCGUGG-------------UGGUAGu -5'
12483 5' -57.8 NC_003324.1 + 23136 0.69 0.385739
Target:  5'- cGUGGgaCAGUGGG-GCGCCGauuUCGUCAa -3'
miRNA:   3'- -UACCaaGUCGCCCgCGUGGU---GGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.