miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12484 5' -57.1 NC_003324.1 + 50317 1.08 0.000968
Target:  5'- uAGUCCCUGACGAUCGCCUGAUCGCCGc -3'
miRNA:   3'- -UCAGGGACUGCUAGCGGACUAGCGGC- -5'
12484 5' -57.1 NC_003324.1 + 8180 0.69 0.436182
Target:  5'- cAGUCCCUGcucacugcccggcgGCGcgCGCCUGGcacuUCGaCCa -3'
miRNA:   3'- -UCAGGGAC--------------UGCuaGCGGACU----AGC-GGc -5'
12484 5' -57.1 NC_003324.1 + 49985 0.69 0.468066
Target:  5'- --gCCCUGAUGGggGCaaUGAUCGCCGc -3'
miRNA:   3'- ucaGGGACUGCUagCGg-ACUAGCGGC- -5'
12484 5' -57.1 NC_003324.1 + 29419 0.67 0.581663
Target:  5'- aGGUCUC-GAUGcgCGCCgggaaccGGUCGCCa -3'
miRNA:   3'- -UCAGGGaCUGCuaGCGGa------CUAGCGGc -5'
12484 5' -57.1 NC_003324.1 + 45790 0.7 0.420253
Target:  5'- -aUCCgUGcCG-UCGCCUGAUUGCCc -3'
miRNA:   3'- ucAGGgACuGCuAGCGGACUAGCGGc -5'
12484 5' -57.1 NC_003324.1 + 24670 0.68 0.508246
Target:  5'- cGG-CCCcGAUGAUCcuGCgCUGGUCGCCc -3'
miRNA:   3'- -UCaGGGaCUGCUAG--CG-GACUAGCGGc -5'
12484 5' -57.1 NC_003324.1 + 35546 0.68 0.518522
Target:  5'- cGUCCCc-ACGcUCGCCgacAUCGCCGa -3'
miRNA:   3'- uCAGGGacUGCuAGCGGac-UAGCGGC- -5'
12484 5' -57.1 NC_003324.1 + 22191 0.67 0.581663
Target:  5'- -uUCCCacagGGCucGAUCGUCUGGcgCGCCGa -3'
miRNA:   3'- ucAGGGa---CUG--CUAGCGGACUa-GCGGC- -5'
12484 5' -57.1 NC_003324.1 + 49453 0.67 0.592371
Target:  5'- gGGUCgCUuuCGAggUCGCCcGAUCGUCGa -3'
miRNA:   3'- -UCAGgGAcuGCU--AGCGGaCUAGCGGC- -5'
12484 5' -57.1 NC_003324.1 + 15112 0.66 0.64622
Target:  5'- cGUCCUgcgccAUGAUCGaCCUGccGUCGCCu -3'
miRNA:   3'- uCAGGGac---UGCUAGC-GGAC--UAGCGGc -5'
12484 5' -57.1 NC_003324.1 + 14729 0.75 0.197232
Target:  5'- aGGUa-CUGGCuguuGGUCGCCUGAUUGCCGg -3'
miRNA:   3'- -UCAggGACUG----CUAGCGGACUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.