Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12485 | 3' | -56.1 | NC_003324.1 | + | 47847 | 0.65 | 0.680307 |
Target: 5'- aGGCGGcGCUGCCGCugaaaccguaccugACCGGcGuCAGg- -3' miRNA: 3'- -CCGUUaCGACGGUG--------------UGGCCuC-GUCac -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 25612 | 0.66 | 0.672643 |
Target: 5'- cGGCc--GCUGCUGCGCCGGcacGGCuGcUGa -3' miRNA: 3'- -CCGuuaCGACGGUGUGGCC---UCGuC-AC- -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 45217 | 0.66 | 0.672643 |
Target: 5'- aGGCAcaucguUGUUGaUACGCCGGcAGCGGUc -3' miRNA: 3'- -CCGUu-----ACGACgGUGUGGCC-UCGUCAc -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 44932 | 0.66 | 0.661663 |
Target: 5'- gGGCAAagGCUGCC-CACgGcAGCAGc- -3' miRNA: 3'- -CCGUUa-CGACGGuGUGgCcUCGUCac -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 42289 | 0.66 | 0.660563 |
Target: 5'- cGGCAAcGCugagugcgccgccUGCCACguGCCGGGcGcCGGUGa -3' miRNA: 3'- -CCGUUaCG-------------ACGGUG--UGGCCU-C-GUCAC- -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 9212 | 0.66 | 0.639629 |
Target: 5'- cGGUGAUGCUGCCgguaaaccccGCACCcGAGaGGUu -3' miRNA: 3'- -CCGUUACGACGG----------UGUGGcCUCgUCAc -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 4454 | 0.67 | 0.61316 |
Target: 5'- gGGC-AUGCUGCaaacccgauucagGCGCCGGAuGCGGc- -3' miRNA: 3'- -CCGuUACGACGg------------UGUGGCCU-CGUCac -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 2045 | 0.67 | 0.606553 |
Target: 5'- uGGCAcGUGCUuguggugauaGCCGgACCGGuuaAGCAGg- -3' miRNA: 3'- -CCGU-UACGA----------CGGUgUGGCC---UCGUCac -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 36268 | 0.67 | 0.595559 |
Target: 5'- uGCccUGCUGCUugacgaugaugGCAUCGGGGCGGg- -3' miRNA: 3'- cCGuuACGACGG-----------UGUGGCCUCGUCac -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 31322 | 0.67 | 0.584596 |
Target: 5'- cGCAGUGCggccgGCgGCGCUGGcgcuGGCGGg- -3' miRNA: 3'- cCGUUACGa----CGgUGUGGCC----UCGUCac -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 41250 | 0.67 | 0.584596 |
Target: 5'- uGUAGUGCUGCaggcagucgaGCACCGGcuugauGCGGUu -3' miRNA: 3'- cCGUUACGACGg---------UGUGGCCu-----CGUCAc -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 28852 | 0.68 | 0.55198 |
Target: 5'- aGCAcgcGCuUGCga-GCCGGAGCAGUGa -3' miRNA: 3'- cCGUua-CG-ACGgugUGGCCUCGUCAC- -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 20581 | 0.68 | 0.55198 |
Target: 5'- uGGCGagcgggauccgGUGCUGUgGCGCCGucGcCAGUGa -3' miRNA: 3'- -CCGU-----------UACGACGgUGUGGCcuC-GUCAC- -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 30297 | 0.68 | 0.497944 |
Target: 5'- cGGCGcGUGCUGgcugguaCCACACgCGGAGCcGUu -3' miRNA: 3'- -CCGU-UACGAC-------GGUGUG-GCCUCGuCAc -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 12870 | 0.69 | 0.478413 |
Target: 5'- uGGUuuUGCUGCCagGCGCCaugaaauaGaGGGCAGUGu -3' miRNA: 3'- -CCGuuACGACGG--UGUGG--------C-CUCGUCAC- -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 39454 | 0.69 | 0.468286 |
Target: 5'- aGGCAA-GCUGCUuCGCCGGAuGUGGc- -3' miRNA: 3'- -CCGUUaCGACGGuGUGGCCU-CGUCac -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 8282 | 0.69 | 0.458271 |
Target: 5'- uGGUcgaAGUGCcagGCgCGCGCCGccGGGCAGUGa -3' miRNA: 3'- -CCG---UUACGa--CG-GUGUGGC--CUCGUCAC- -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 7794 | 0.7 | 0.409067 |
Target: 5'- cGGCcGUGCUGaCCucguucGCGCCGGuguuuccggggucGGCGGUGu -3' miRNA: 3'- -CCGuUACGAC-GG------UGUGGCC-------------UCGUCAC- -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 55051 | 0.7 | 0.391596 |
Target: 5'- cGGCuggGCUGCCGCGaCGGcGCAGa- -3' miRNA: 3'- -CCGuuaCGACGGUGUgGCCuCGUCac -5' |
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12485 | 3' | -56.1 | NC_003324.1 | + | 17690 | 0.71 | 0.382598 |
Target: 5'- cGGCAucGUGCUcaacGgCGCGCCGGGGCAc-- -3' miRNA: 3'- -CCGU--UACGA----CgGUGUGGCCUCGUcac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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