miRNA: 3'- -CCGUUACGACGG----------UGUGGcCUCgUCAc -5'
miRNA: 3'- -CCGUUa-CGACGGuGUGgCcUCGUCac -5'
miRNA: 3'- -CCGUu-----ACGACgGUGUGGCC-UCGUCAc -5'
miRNA: 3'- -CCGU--UACGA----CgGUGUGGCCUCGUcac -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12485 | 3' | -56.1 | NC_003324.1 | + | 9212 | 0.66 | 0.639629 |
|
Target: 5'- cGGUGAUGCUGCCgguaaaccccGCACCcGAGaGGUu -3' miRNA: 3'- -CCGUUACGACGG----------UGUGGcCUCgUCAc -5' |
|||||||
| 12485 | 3' | -56.1 | NC_003324.1 | + | 44932 | 0.66 | 0.661663 |
|
Target: 5'- gGGCAAagGCUGCC-CACgGcAGCAGc- -3' miRNA: 3'- -CCGUUa-CGACGGuGUGgCcUCGUCac -5' |
|||||||
| 12485 | 3' | -56.1 | NC_003324.1 | + | 45217 | 0.66 | 0.672643 |
|
Target: 5'- aGGCAcaucguUGUUGaUACGCCGGcAGCGGUc -3' miRNA: 3'- -CCGUu-----ACGACgGUGUGGCC-UCGUCAc -5' |
|||||||
| 12485 | 3' | -56.1 | NC_003324.1 | + | 17690 | 0.71 | 0.382598 |
|
Target: 5'- cGGCAucGUGCUcaacGgCGCGCCGGGGCAc-- -3' miRNA: 3'- -CCGU--UACGA----CgGUGUGGCCUCGUcac -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home