miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12487 5' -56.2 NC_003324.1 + 51441 1.09 0.000909
Target:  5'- gCGCGAGAACGCUGCUGUCCGUCACCAg -3'
miRNA:   3'- -GCGCUCUUGCGACGACAGGCAGUGGU- -5'
12487 5' -56.2 NC_003324.1 + 20586 0.77 0.158363
Target:  5'- aGCGGGAucCGgUGCUGUggcgCCGUCGCCAg -3'
miRNA:   3'- gCGCUCUu-GCgACGACA----GGCAGUGGU- -5'
12487 5' -56.2 NC_003324.1 + 27192 0.7 0.421616
Target:  5'- aGCGAGAgcgaccGCGCUGgUGUgCUG-CGCCAg -3'
miRNA:   3'- gCGCUCU------UGCGACgACA-GGCaGUGGU- -5'
12487 5' -56.2 NC_003324.1 + 32535 0.69 0.480059
Target:  5'- gGCGAcGAGgGCaugGCUG-CCGUUGCCAg -3'
miRNA:   3'- gCGCU-CUUgCGa--CGACaGGCAGUGGU- -5'
12487 5' -56.2 NC_003324.1 + 8354 0.69 0.480059
Target:  5'- gGCGGGGA-GCUGC-GUCUGUCAUgGa -3'
miRNA:   3'- gCGCUCUUgCGACGaCAGGCAGUGgU- -5'
12487 5' -56.2 NC_003324.1 + 25465 0.69 0.510728
Target:  5'- gGCGAGcAUGCuuUGCUcGUCCcggGUCGCCGg -3'
miRNA:   3'- gCGCUCuUGCG--ACGA-CAGG---CAGUGGU- -5'
12487 5' -56.2 NC_003324.1 + 15736 0.69 0.510728
Target:  5'- uCGCGucaucGAGCGC-GCcGgggCCGUCGCCAu -3'
miRNA:   3'- -GCGCu----CUUGCGaCGaCa--GGCAGUGGU- -5'
12487 5' -56.2 NC_003324.1 + 32957 0.68 0.542184
Target:  5'- uCGUGaAGGucacGCGCUGCaucUGcucgCCGUCGCCAa -3'
miRNA:   3'- -GCGC-UCU----UGCGACG---ACa---GGCAGUGGU- -5'
12487 5' -56.2 NC_003324.1 + 2625 0.68 0.542184
Target:  5'- gGCGuGc-CGuCUGCcGUCCGUCGCCu -3'
miRNA:   3'- gCGCuCuuGC-GACGaCAGGCAGUGGu -5'
12487 5' -56.2 NC_003324.1 + 27596 0.67 0.585048
Target:  5'- uGCGAGggUuuuuGCUGCgcGUCCGgcuUUACCGu -3'
miRNA:   3'- gCGCUCuuG----CGACGa-CAGGC---AGUGGU- -5'
12487 5' -56.2 NC_003324.1 + 35123 0.67 0.595881
Target:  5'- aGCGAcgacgaucaGGcCGCUGCUG-CCGcCGCCGc -3'
miRNA:   3'- gCGCU---------CUuGCGACGACaGGCaGUGGU- -5'
12487 5' -56.2 NC_003324.1 + 14733 0.66 0.682855
Target:  5'- uGCGAGGuACug-GCUGUUgGUCGCCu -3'
miRNA:   3'- gCGCUCU-UGcgaCGACAGgCAGUGGu -5'
12487 5' -56.2 NC_003324.1 + 6185 0.66 0.682855
Target:  5'- uGCGAGAGgcagcccuUGCUGCga-CCGUCgaaGCCAu -3'
miRNA:   3'- gCGCUCUU--------GCGACGacaGGCAG---UGGU- -5'
12487 5' -56.2 NC_003324.1 + 42107 0.66 0.704329
Target:  5'- gGcCGGGAGCGCUucGCac-UCGUCGCCAa -3'
miRNA:   3'- gC-GCUCUUGCGA--CGacaGGCAGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.