miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12488 3' -55.1 NC_003324.1 + 42308 0.66 0.725137
Target:  5'- -gCCUGCCacgugccgggcGCCGguGACAgACUUaGAGCg -3'
miRNA:   3'- caGGACGG-----------CGGCuuCUGU-UGAG-CUCG- -5'
12488 3' -55.1 NC_003324.1 + 43141 0.73 0.323497
Target:  5'- cGUCCUGCCGUgGGAuGACAcCUCGcgaaccguuaccGGCa -3'
miRNA:   3'- -CAGGACGGCGgCUU-CUGUuGAGC------------UCG- -5'
12488 3' -55.1 NC_003324.1 + 43216 0.66 0.735697
Target:  5'- -gCUcGCCGUCGAGGACGGCaaccugCGGGa -3'
miRNA:   3'- caGGaCGGCGGCUUCUGUUGa-----GCUCg -5'
12488 3' -55.1 NC_003324.1 + 44011 0.69 0.529613
Target:  5'- --gCUGCCGCCG-GGAUcauGC-CGAGCg -3'
miRNA:   3'- cagGACGGCGGCuUCUGu--UGaGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 47411 0.67 0.682088
Target:  5'- -gCCUGCCaGgCGGAGcACAGCUuCGAcGCc -3'
miRNA:   3'- caGGACGG-CgGCUUC-UGUUGA-GCU-CG- -5'
12488 3' -55.1 NC_003324.1 + 48478 0.68 0.587811
Target:  5'- uUCCaagGCCgcaGCCGAgcagguaggcgccaaGGGCAACUgCGAGCc -3'
miRNA:   3'- cAGGa--CGG---CGGCU---------------UCUGUUGA-GCUCG- -5'
12488 3' -55.1 NC_003324.1 + 48965 0.66 0.746152
Target:  5'- aGUCCuggaUGCgGgCGAAGGCGcgaUUGAGCg -3'
miRNA:   3'- -CAGG----ACGgCgGCUUCUGUug-AGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 49208 0.66 0.755464
Target:  5'- uUCCUGCCGacgauCCGAAcgccuGCGACgccaugaUCGGGCa -3'
miRNA:   3'- cAGGACGGC-----GGCUUc----UGUUG-------AGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 50018 0.68 0.631679
Target:  5'- -gCgUGCUGCUGAucuugaaugcgauggGGGCAGCgaaggCGAGCa -3'
miRNA:   3'- caGgACGGCGGCU---------------UCUGUUGa----GCUCG- -5'
12488 3' -55.1 NC_003324.1 + 50362 0.66 0.750303
Target:  5'- uUCUUGCCGUCGAccGGCGGCgcaucauucucuuucUCGAcGCg -3'
miRNA:   3'- cAGGACGGCGGCUu-CUGUUG---------------AGCU-CG- -5'
12488 3' -55.1 NC_003324.1 + 51727 0.66 0.725137
Target:  5'- -gCCgacGCaauCGCCGAGGGCGccaagcaguAUUCGAGCu -3'
miRNA:   3'- caGGa--CG---GCGGCUUCUGU---------UGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 52257 1.11 0.000804
Target:  5'- cGUCCUGCCGCCGAAGACAACUCGAGCc -3'
miRNA:   3'- -CAGGACGGCGGCUUCUGUUGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 53447 0.73 0.347844
Target:  5'- -gUCUGCUcaguGCCGAAGAUgauuGCUUGAGCg -3'
miRNA:   3'- caGGACGG----CGGCUUCUGu---UGAGCUCG- -5'
12488 3' -55.1 NC_003324.1 + 55400 0.68 0.605319
Target:  5'- aUCCUugaGCCGCUGu-GGCAGCUUGuuccAGCa -3'
miRNA:   3'- cAGGA---CGGCGGCuuCUGUUGAGC----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.