miRNA display CGI


Results 21 - 24 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12488 5' -64.1 NC_003324.1 + 7777 0.66 0.313452
Target:  5'- uUCGCgCCGGUguuucCGGGGuCGGC-GGUGUg -3'
miRNA:   3'- -GGCG-GGCUAa----GCCCC-GCCGgCCGCAg -5'
12488 5' -64.1 NC_003324.1 + 22222 0.66 0.335562
Target:  5'- gCCGCCgCGcaccUUCGGGaGCGGCaa-CGUCu -3'
miRNA:   3'- -GGCGG-GCu---AAGCCC-CGCCGgccGCAG- -5'
12488 5' -64.1 NC_003324.1 + 40257 0.65 0.357998
Target:  5'- gCCGCCuugcgugCGGUcCGGGGCuuGGCgGGUGcCu -3'
miRNA:   3'- -GGCGG-------GCUAaGCCCCG--CCGgCCGCaG- -5'
12488 5' -64.1 NC_003324.1 + 10244 0.65 0.357998
Target:  5'- aCgGgCCGAgaggUCGGGcauugucucGCGGauuuguuCCGGCGUCg -3'
miRNA:   3'- -GgCgGGCUa---AGCCC---------CGCC-------GGCCGCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.