miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12490 3' -53.6 NC_003324.1 + 14679 0.66 0.794419
Target:  5'- cGACGAACAucAUGGGGcagggcuUCCaaGGUGCGa- -3'
miRNA:   3'- -UUGUUUGU--UACCCC-------AGGa-CCACGCgg -5'
12490 3' -53.6 NC_003324.1 + 28608 0.66 0.775231
Target:  5'- cGGCAGGCcucAGUGGucucGGUCCgaaGG-GCGCCc -3'
miRNA:   3'- -UUGUUUG---UUACC----CCAGGa--CCaCGCGG- -5'
12490 3' -53.6 NC_003324.1 + 29947 0.7 0.544214
Target:  5'- gGACGGGCGAgGGGcGUCCUGcGUaGCGgCg -3'
miRNA:   3'- -UUGUUUGUUaCCC-CAGGAC-CA-CGCgG- -5'
12490 3' -53.6 NC_003324.1 + 42364 0.67 0.743834
Target:  5'- cAGCAAGCAc----GUUCUGGUGCGUCg -3'
miRNA:   3'- -UUGUUUGUuacccCAGGACCACGCGG- -5'
12490 3' -53.6 NC_003324.1 + 46740 0.67 0.743834
Target:  5'- --aGAGCAcgGGGcGcCgaGGUGUGCCc -3'
miRNA:   3'- uugUUUGUuaCCC-CaGgaCCACGCGG- -5'
12490 3' -53.6 NC_003324.1 + 51185 0.71 0.490539
Target:  5'- uGACGAGCg--GGGGUUCUGaGaUGCGCg -3'
miRNA:   3'- -UUGUUUGuuaCCCCAGGAC-C-ACGCGg -5'
12490 3' -53.6 NC_003324.1 + 53878 1 0.006267
Target:  5'- cAACAAACAAUGGGG-CCUGGUGCGCCc -3'
miRNA:   3'- -UUGUUUGUUACCCCaGGACCACGCGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.