miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12491 5' -56.4 NC_003324.1 + 48982 0.66 0.676167
Target:  5'- cUUGUGGCgGGUGGCGgaguccuGGAuGCGGGcgAAGg -3'
miRNA:   3'- -AGUAUCGgCCGCCGC-------UCU-CGCCU--UUC- -5'
12491 5' -56.4 NC_003324.1 + 56643 0.66 0.666394
Target:  5'- gUUAUGGgCGGCGGCauGGGucGCGGGc-- -3'
miRNA:   3'- -AGUAUCgGCCGCCG--CUCu-CGCCUuuc -5'
12491 5' -56.4 NC_003324.1 + 45362 0.66 0.655506
Target:  5'- ---aAGCaGGCGGCGAGcAGC-GAGGGc -3'
miRNA:   3'- aguaUCGgCCGCCGCUC-UCGcCUUUC- -5'
12491 5' -56.4 NC_003324.1 + 44892 0.66 0.644597
Target:  5'- -gGUAcGCCGGgGcGCGGGGGCuGGAu-- -3'
miRNA:   3'- agUAU-CGGCCgC-CGCUCUCG-CCUuuc -5'
12491 5' -56.4 NC_003324.1 + 11228 0.67 0.61184
Target:  5'- ---gAGCCGGCcgccagaccGGCGA-AGCGGAccAAGg -3'
miRNA:   3'- aguaUCGGCCG---------CCGCUcUCGCCU--UUC- -5'
12491 5' -56.4 NC_003324.1 + 36243 0.68 0.536404
Target:  5'- ---aGGUCGGCGGCGuGA-CGGAuGAGa -3'
miRNA:   3'- aguaUCGGCCGCCGCuCUcGCCU-UUC- -5'
12491 5' -56.4 NC_003324.1 + 45767 0.68 0.515394
Target:  5'- aUCAUGGCCuGCcacgccuuccGC-AGAGCGGAAAGg -3'
miRNA:   3'- -AGUAUCGGcCGc---------CGcUCUCGCCUUUC- -5'
12491 5' -56.4 NC_003324.1 + 57383 0.68 0.515394
Target:  5'- ---gGGCuCGGCggaGGCGAGGGCGGc--- -3'
miRNA:   3'- aguaUCG-GCCG---CCGCUCUCGCCuuuc -5'
12491 5' -56.4 NC_003324.1 + 51528 0.69 0.484533
Target:  5'- aCAUGGCCGGUGGCuuGGGCu----- -3'
miRNA:   3'- aGUAUCGGCCGCCGcuCUCGccuuuc -5'
12491 5' -56.4 NC_003324.1 + 57031 0.71 0.362673
Target:  5'- ---gAG-CGGCGGCGAGGGCGcGGAu- -3'
miRNA:   3'- aguaUCgGCCGCCGCUCUCGC-CUUuc -5'
12491 5' -56.4 NC_003324.1 + 14595 0.71 0.362673
Target:  5'- ---cGGCCGGCGGCGcAG-GCGGu--- -3'
miRNA:   3'- aguaUCGGCCGCCGC-UCuCGCCuuuc -5'
12491 5' -56.4 NC_003324.1 + 31315 0.72 0.314057
Target:  5'- ---cGGCCGGCGGCGcuGGcgcuGGCGGggGc -3'
miRNA:   3'- aguaUCGGCCGCCGC--UC----UCGCCuuUc -5'
12491 5' -56.4 NC_003324.1 + 56195 0.78 0.135639
Target:  5'- uUCcgGGuuGGCGGCGAGAaCGGAAAc -3'
miRNA:   3'- -AGuaUCggCCGCCGCUCUcGCCUUUc -5'
12491 5' -56.4 NC_003324.1 + 54445 1.08 0.000909
Target:  5'- gUCAUAGCCGGCGGCGAGAGCGGAAAGc -3'
miRNA:   3'- -AGUAUCGGCCGCCGCUCUCGCCUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.