miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12492 3' -61.7 NC_003324.1 + 56630 0.66 0.388019
Target:  5'- gCAUGGGUCGc--GGGCaacUUCGCCCGCa -3'
miRNA:   3'- -GUGUCCGGCcuaCCCGa--GAGCGGGUG- -5'
12492 3' -61.7 NC_003324.1 + 50814 0.66 0.379411
Target:  5'- aGCAGuGCCaGGAguGGUUCaaCGCCCACa -3'
miRNA:   3'- gUGUC-CGG-CCUacCCGAGa-GCGGGUG- -5'
12492 3' -61.7 NC_003324.1 + 27901 0.66 0.370933
Target:  5'- aCACcagcGGCUGGAagGGGCUCggCGCCa-- -3'
miRNA:   3'- -GUGu---CCGGCCUa-CCCGAGa-GCGGgug -5'
12492 3' -61.7 NC_003324.1 + 1814 0.66 0.362585
Target:  5'- -cCAGaCCGGAUc-GCUCUCGUCCACc -3'
miRNA:   3'- guGUCcGGCCUAccCGAGAGCGGGUG- -5'
12492 3' -61.7 NC_003324.1 + 32815 0.66 0.354368
Target:  5'- aACcGGUCGGc-GGGCUUuguuuUUGCCCACa -3'
miRNA:   3'- gUGuCCGGCCuaCCCGAG-----AGCGGGUG- -5'
12492 3' -61.7 NC_003324.1 + 43246 0.67 0.338332
Target:  5'- gGCuGGCuCGGAUuGGCgCUCGCUCAa -3'
miRNA:   3'- gUGuCCG-GCCUAcCCGaGAGCGGGUg -5'
12492 3' -61.7 NC_003324.1 + 32374 0.67 0.32283
Target:  5'- ----aGCCGGugaacuggucGGGCUCUCGCaCCACc -3'
miRNA:   3'- gugucCGGCCua--------CCCGAGAGCG-GGUG- -5'
12492 3' -61.7 NC_003324.1 + 49730 0.67 0.307864
Target:  5'- uGCAGGCgGGAUGGuucaGCgggCGCaCCACc -3'
miRNA:   3'- gUGUCCGgCCUACC----CGagaGCG-GGUG- -5'
12492 3' -61.7 NC_003324.1 + 18516 0.68 0.293434
Target:  5'- gCGCGGGUCGGAUcaucGGCUUccuUCGCCUg- -3'
miRNA:   3'- -GUGUCCGGCCUAc---CCGAG---AGCGGGug -5'
12492 3' -61.7 NC_003324.1 + 54870 0.7 0.191584
Target:  5'- cCGCAGGcCCGGAU--GCUCgcgaugucggCGCCCGCa -3'
miRNA:   3'- -GUGUCC-GGCCUAccCGAGa---------GCGGGUG- -5'
12492 3' -61.7 NC_003324.1 + 28068 0.77 0.063077
Target:  5'- cCACGGcuuGCCGGAUGGGCUCgUGCCUuuGCg -3'
miRNA:   3'- -GUGUC---CGGCCUACCCGAGaGCGGG--UG- -5'
12492 3' -61.7 NC_003324.1 + 55172 1.09 0.000215
Target:  5'- aCACAGGCCGGAUGGGCUCUCGCCCACg -3'
miRNA:   3'- -GUGUCCGGCCUACCCGAGAGCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.