miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12492 5' -50.7 NC_003324.1 + 15354 0.66 0.921574
Target:  5'- aGGUGCUCGAUGcgcgcgaggacGCUGAauacgagCGCAgcgaGCa -3'
miRNA:   3'- aCCACGGGUUAC-----------UGACUa------GCGUaa--CG- -5'
12492 5' -50.7 NC_003324.1 + 45960 0.66 0.908571
Target:  5'- aGcGUGCCCGAUGAacaucacGGccUCGCAUcagGCg -3'
miRNA:   3'- aC-CACGGGUUACUga-----CU--AGCGUAa--CG- -5'
12492 5' -50.7 NC_003324.1 + 23537 0.67 0.894392
Target:  5'- cGGUGCCCcacagcGUGGCggcggGcgCGCucgGCg -3'
miRNA:   3'- aCCACGGGu-----UACUGa----CuaGCGuaaCG- -5'
12492 5' -50.7 NC_003324.1 + 55428 0.67 0.894392
Target:  5'- cGGUGCCgGuc--UUGAUCGCGUUccaGCg -3'
miRNA:   3'- aCCACGGgUuacuGACUAGCGUAA---CG- -5'
12492 5' -50.7 NC_003324.1 + 46155 0.67 0.894392
Target:  5'- gUGGUGCUCAGaagcGACUGGcCGCucaucucgGCa -3'
miRNA:   3'- -ACCACGGGUUa---CUGACUaGCGuaa-----CG- -5'
12492 5' -50.7 NC_003324.1 + 39729 0.68 0.826774
Target:  5'- aGGgcgcGCUCGGUGGCUGGcuaCGCGagcUUGCg -3'
miRNA:   3'- aCCa---CGGGUUACUGACUa--GCGU---AACG- -5'
12492 5' -50.7 NC_003324.1 + 8244 0.69 0.807471
Target:  5'- aGGgacugGCCCugAAUGGCuaUGAUCGCAgucgaGCg -3'
miRNA:   3'- aCCa----CGGG--UUACUG--ACUAGCGUaa---CG- -5'
12492 5' -50.7 NC_003324.1 + 8085 0.69 0.777058
Target:  5'- aGGUGaCC-AUGGCUGccacgGUCGcCGUUGCg -3'
miRNA:   3'- aCCACgGGuUACUGAC-----UAGC-GUAACG- -5'
12492 5' -50.7 NC_003324.1 + 57086 0.69 0.76658
Target:  5'- aGGUGCgCAA-GGCUGGccucgcccUCGCAgcGCa -3'
miRNA:   3'- aCCACGgGUUaCUGACU--------AGCGUaaCG- -5'
12492 5' -50.7 NC_003324.1 + 22596 0.69 0.76658
Target:  5'- cGGcgGCCUuuUGGCUGccugcCGCGUUGCc -3'
miRNA:   3'- aCCa-CGGGuuACUGACua---GCGUAACG- -5'
12492 5' -50.7 NC_003324.1 + 7006 0.7 0.716658
Target:  5'- cUGGUGCCCucgGACUGAaccuugauaccgacCGCGgugGCg -3'
miRNA:   3'- -ACCACGGGuuaCUGACUa-------------GCGUaa-CG- -5'
12492 5' -50.7 NC_003324.1 + 11805 0.72 0.621425
Target:  5'- aUGGUGCCCcgaaGGUGAagaUUGGUgGCGUUGa -3'
miRNA:   3'- -ACCACGGG----UUACU---GACUAgCGUAACg -5'
12492 5' -50.7 NC_003324.1 + 41813 0.77 0.360212
Target:  5'- gGGUGCC--GUGGCgUGAUCGCAUggaGCg -3'
miRNA:   3'- aCCACGGguUACUG-ACUAGCGUAa--CG- -5'
12492 5' -50.7 NC_003324.1 + 55208 1.12 0.001712
Target:  5'- aUGGUGCCCAAUGACUGAUCGCAUUGCc -3'
miRNA:   3'- -ACCACGGGUUACUGACUAGCGUAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.